Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 TESC-206ENST00000541210 936 ntTSL 3 BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
CSB-PGBD3P0DP91 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
CSB-PGBD3P0DP91 AC138932.3-201ENST00000567634 1902 ntBASIC29.41■■■□□ 2.3
CSB-PGBD3P0DP91 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CSB-PGBD3P0DP91 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
CSB-PGBD3P0DP91 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC29.41■■■□□ 2.3
CSB-PGBD3P0DP91 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 SMUG1P1-201ENST00000590640 811 ntBASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 AC011767.1-201ENST00000617410 1153 ntBASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CSB-PGBD3P0DP91 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 ABHD17AP1-201ENST00000358206 933 ntBASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 SPI1-203ENST00000533030 661 ntTSL 2 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 AC068587.7-201ENST00000641602 218 ntBASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CSB-PGBD3P0DP91 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
CSB-PGBD3P0DP91 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC29.39■■■□□ 2.29
CSB-PGBD3P0DP91 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 MIR663A-201ENST00000385250 93 ntBASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 METTL26-203ENST00000397664 604 ntTSL 2 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 WT1-AS_3.1-201ENST00000613262 234 ntBASIC29.38■■■□□ 2.29
CSB-PGBD3P0DP91 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 AC087239.1-201ENST00000622671 572 ntBASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
CSB-PGBD3P0DP91 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 ESRRAP2-201ENST00000418437 1549 ntBASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 NCF1B-203ENST00000435988 1254 ntBASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 AC010141.3-201ENST00000456659 717 ntBASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CSB-PGBD3P0DP91 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 KRT18P11-201ENST00000435214 1283 ntBASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC29.35■■■□□ 2.29
CSB-PGBD3P0DP91 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 AC079140.4-201ENST00000507448 529 ntBASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 AC142381.3-201ENST00000568208 1670 ntBASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 AC079630.1-202ENST00000618127 1840 ntBASIC29.34■■■□□ 2.29
CSB-PGBD3P0DP91 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC29.33■■■□□ 2.29
CSB-PGBD3P0DP91 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC29.33■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms