Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.46
TPM1P09493 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
TPM1P09493 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
TPM1P09493 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
TPM1P09493 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
TPM1P09493 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.14■■□□□ 1.46
TPM1P09493 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.14■■□□□ 1.46
TPM1P09493 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
TPM1P09493 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
TPM1P09493 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.14■■□□□ 1.45
TPM1P09493 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
TPM1P09493 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
TPM1P09493 AL137060.1-201ENST00000618151 2648 ntBASIC24.14■■□□□ 1.45
TPM1P09493 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 AC080038.3-201ENST00000623346 1952 ntBASIC24.13■■□□□ 1.45
TPM1P09493 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.13■■□□□ 1.45
TPM1P09493 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
TPM1P09493 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
TPM1P09493 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.13■■□□□ 1.45
TPM1P09493 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.13■■□□□ 1.45
TPM1P09493 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
TPM1P09493 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.12■■□□□ 1.45
TPM1P09493 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.12■■□□□ 1.45
TPM1P09493 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
TPM1P09493 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.12■■□□□ 1.45
TPM1P09493 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.12■■□□□ 1.45
TPM1P09493 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
TPM1P09493 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TPM1P09493 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
TPM1P09493 NTF6A-201ENST00000591175 560 ntBASIC24.11■■□□□ 1.45
TPM1P09493 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.11■■□□□ 1.45
TPM1P09493 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TPM1P09493 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
TPM1P09493 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TPM1P09493 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
TPM1P09493 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.1■■□□□ 1.45
TPM1P09493 ABHD17AP5-201ENST00000580133 923 ntBASIC24.1■■□□□ 1.45
TPM1P09493 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TPM1P09493 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.1■■□□□ 1.45
TPM1P09493 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.1■■□□□ 1.45
TPM1P09493 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.1■■□□□ 1.45
TPM1P09493 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.1■■□□□ 1.45
TPM1P09493 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
TPM1P09493 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
TPM1P09493 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
TPM1P09493 AC087742.1-201ENST00000575880 1738 ntBASIC24.1■■□□□ 1.45
TPM1P09493 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
TPM1P09493 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.09■■□□□ 1.45
TPM1P09493 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
TPM1P09493 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TPM1P09493 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
TPM1P09493 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
TPM1P09493 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
TPM1P09493 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
TPM1P09493 FBXW4P1-201ENST00000426721 2239 ntBASIC24.08■■□□□ 1.45
TPM1P09493 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.08■■□□□ 1.45
TPM1P09493 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
TPM1P09493 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.08■■□□□ 1.44
TPM1P09493 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.08■■□□□ 1.44
TPM1P09493 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
TPM1P09493 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.08■■□□□ 1.44
TPM1P09493 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.08■■□□□ 1.44
TPM1P09493 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.07■■□□□ 1.44
TPM1P09493 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
TPM1P09493 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC24.06■■□□□ 1.44
TPM1P09493 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.06■■□□□ 1.44
TPM1P09493 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.06■■□□□ 1.44
TPM1P09493 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
TPM1P09493 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
TPM1P09493 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms