Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.64■□□□□ 0.89
CLPTM1O96005 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.64■□□□□ 0.89
CLPTM1O96005 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.64■□□□□ 0.89
CLPTM1O96005 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CLPTM1O96005 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CLPTM1O96005 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CLPTM1O96005 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.63■□□□□ 0.89
CLPTM1O96005 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.63■□□□□ 0.89
CLPTM1O96005 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.63■□□□□ 0.89
CLPTM1O96005 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.63■□□□□ 0.89
CLPTM1O96005 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLPTM1O96005 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CLPTM1O96005 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CLPTM1O96005 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.62■□□□□ 0.89
CLPTM1O96005 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.62■□□□□ 0.89
CLPTM1O96005 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.62■□□□□ 0.89
CLPTM1O96005 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.62■□□□□ 0.89
CLPTM1O96005 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 FAM99A-202ENST00000538190 1989 ntBASIC20.62■□□□□ 0.89
CLPTM1O96005 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CLPTM1O96005 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CLPTM1O96005 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.61■□□□□ 0.89
CLPTM1O96005 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CLPTM1O96005 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CLPTM1O96005 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CLPTM1O96005 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CLPTM1O96005 AC080038.3-201ENST00000623346 1952 ntBASIC20.6■□□□□ 0.89
CLPTM1O96005 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.6■□□□□ 0.89
CLPTM1O96005 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CLPTM1O96005 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CLPTM1O96005 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.59■□□□□ 0.89
CLPTM1O96005 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CLPTM1O96005 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CLPTM1O96005 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.59■□□□□ 0.89
CLPTM1O96005 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.59■□□□□ 0.89
CLPTM1O96005 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CLPTM1O96005 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CLPTM1O96005 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CLPTM1O96005 AL391422.3-201ENST00000603791 2761 ntBASIC20.58■□□□□ 0.89
CLPTM1O96005 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 AC007952.6-201ENST00000573168 2673 ntBASIC20.58■□□□□ 0.89
CLPTM1O96005 AC003957.1-201ENST00000625108 2673 ntBASIC20.58■□□□□ 0.89
CLPTM1O96005 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.58■□□□□ 0.89
CLPTM1O96005 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CLPTM1O96005 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CLPTM1O96005 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CLPTM1O96005 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CLPTM1O96005 AL161729.1-201ENST00000604104 1402 ntBASIC20.58■□□□□ 0.88
CLPTM1O96005 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CLPTM1O96005 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.58■□□□□ 0.88
CLPTM1O96005 AC079630.1-202ENST00000618127 1840 ntBASIC20.57■□□□□ 0.88
CLPTM1O96005 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CLPTM1O96005 LINC01521-201ENST00000504184 1943 ntBASIC20.57■□□□□ 0.88
CLPTM1O96005 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CLPTM1O96005 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CLPTM1O96005 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms