Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
NPHP4O75161 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP4O75161 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP4O75161 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC31.55■■■□□ 2.64
NPHP4O75161 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
NPHP4O75161 AC104187.1-201ENST00000607510 612 ntBASIC31.55■■■□□ 2.64
NPHP4O75161 LINC01529-204ENST00000636474 1715 ntBASIC31.55■■■□□ 2.64
NPHP4O75161 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP4O75161 AC144652.1-201ENST00000609974 1624 ntBASIC31.54■■■□□ 2.64
NPHP4O75161 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
NPHP4O75161 PARP1-202ENST00000366792 553 ntTSL 3 BASIC31.54■■■□□ 2.64
NPHP4O75161 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
NPHP4O75161 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC31.54■■■□□ 2.64
NPHP4O75161 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
NPHP4O75161 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP4O75161 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
NPHP4O75161 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
NPHP4O75161 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
NPHP4O75161 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC31.53■■■□□ 2.64
NPHP4O75161 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC31.53■■■□□ 2.64
NPHP4O75161 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC31.53■■■□□ 2.64
NPHP4O75161 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
NPHP4O75161 CEBPA-AS1-201ENST00000592982 2198 ntBASIC31.52■■■□□ 2.64
NPHP4O75161 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC31.52■■■□□ 2.64
NPHP4O75161 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP4O75161 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC31.52■■■□□ 2.64
NPHP4O75161 AC098590.1-201ENST00000468126 897 ntBASIC31.52■■■□□ 2.64
NPHP4O75161 AF201337.1-201ENST00000520239 748 ntBASIC31.52■■■□□ 2.64
NPHP4O75161 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC31.52■■■□□ 2.64
NPHP4O75161 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC31.52■■■□□ 2.64
NPHP4O75161 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC31.52■■■□□ 2.64
NPHP4O75161 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC31.52■■■□□ 2.64
NPHP4O75161 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP4O75161 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP4O75161 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
NPHP4O75161 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.51■■■□□ 2.64
NPHP4O75161 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC31.51■■■□□ 2.64
NPHP4O75161 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC31.51■■■□□ 2.64
NPHP4O75161 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC31.51■■■□□ 2.64
NPHP4O75161 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
NPHP4O75161 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NPHP4O75161 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
NPHP4O75161 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP4O75161 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC31.5■■■□□ 2.63
NPHP4O75161 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP4O75161 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC31.5■■■□□ 2.63
NPHP4O75161 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
NPHP4O75161 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 CNN2P6-201ENST00000439038 900 ntBASIC31.49■■■□□ 2.63
NPHP4O75161 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC31.49■■■□□ 2.63
NPHP4O75161 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC31.49■■■□□ 2.63
NPHP4O75161 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
NPHP4O75161 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC31.49■■■□□ 2.63
NPHP4O75161 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC31.49■■■□□ 2.63
NPHP4O75161 MYCNOS-205ENST00000641950 531 ntBASIC31.49■■■□□ 2.63
NPHP4O75161 KRT87P-202ENST00000534226 1464 ntBASIC31.48■■■□□ 2.63
NPHP4O75161 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
NPHP4O75161 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC31.48■■■□□ 2.63
NPHP4O75161 AC133552.2-202ENST00000575694 574 ntBASIC31.48■■■□□ 2.63
NPHP4O75161 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC31.48■■■□□ 2.63
NPHP4O75161 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
NPHP4O75161 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC31.48■■■□□ 2.63
NPHP4O75161 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP4O75161 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP4O75161 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP4O75161 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.47■■■□□ 2.63
NPHP4O75161 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC31.47■■■□□ 2.63
NPHP4O75161 BRI3-207ENST00000539286 699 ntTSL 2 BASIC31.47■■■□□ 2.63
NPHP4O75161 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
NPHP4O75161 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NPHP4O75161 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP4O75161 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP4O75161 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
NPHP4O75161 RNA5SP413-201ENST00000516373 109 ntBASIC31.46■■■□□ 2.63
NPHP4O75161 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC31.46■■■□□ 2.63
NPHP4O75161 AC105036.2-201ENST00000569468 176 ntBASIC31.46■■■□□ 2.63
NPHP4O75161 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.45■■■□□ 2.63
NPHP4O75161 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
NPHP4O75161 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC31.45■■■□□ 2.63
NPHP4O75161 AC068587.7-201ENST00000641602 218 ntBASIC31.45■■■□□ 2.63
NPHP4O75161 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
NPHP4O75161 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
NPHP4O75161 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC31.44■■■□□ 2.62
NPHP4O75161 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC31.44■■■□□ 2.62
NPHP4O75161 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
NPHP4O75161 APTR-203ENST00000430801 583 ntTSL 5 BASIC31.44■■■□□ 2.62
NPHP4O75161 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
NPHP4O75161 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms