Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
TRIM13O60858 LINC01960-201ENST00000563759 1884 ntBASIC21.62■■□□□ 1.05
TRIM13O60858 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.62■■□□□ 1.05
TRIM13O60858 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TRIM13O60858 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM13O60858 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM13O60858 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM13O60858 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
TRIM13O60858 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
TRIM13O60858 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM13O60858 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.61■■□□□ 1.05
TRIM13O60858 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.61■■□□□ 1.05
TRIM13O60858 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.61■■□□□ 1.05
TRIM13O60858 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
TRIM13O60858 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM13O60858 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.61■■□□□ 1.05
TRIM13O60858 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRIM13O60858 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM13O60858 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM13O60858 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM13O60858 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 YBX1P4-201ENST00000392794 808 ntBASIC21.6■■□□□ 1.05
TRIM13O60858 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.6■■□□□ 1.05
TRIM13O60858 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM13O60858 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM13O60858 AC009086.3-201ENST00000623486 1008 ntBASIC21.6■■□□□ 1.05
TRIM13O60858 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.6■■□□□ 1.05
TRIM13O60858 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM13O60858 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.6■■□□□ 1.05
TRIM13O60858 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRIM13O60858 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.59■■□□□ 1.05
TRIM13O60858 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 DUX4L4-201ENST00000566884 1269 ntBASIC21.59■■□□□ 1.05
TRIM13O60858 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRIM13O60858 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.59■■□□□ 1.05
TRIM13O60858 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM13O60858 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.58■■□□□ 1.05
TRIM13O60858 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
TRIM13O60858 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRIM13O60858 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM13O60858 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM13O60858 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.58■■□□□ 1.05
TRIM13O60858 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.58■■□□□ 1.05
TRIM13O60858 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRIM13O60858 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
TRIM13O60858 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.58■■□□□ 1.04
TRIM13O60858 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 KRT8P33-201ENST00000508125 1423 ntBASIC21.57■■□□□ 1.04
TRIM13O60858 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.57■■□□□ 1.04
TRIM13O60858 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
TRIM13O60858 AC012354.3-201ENST00000623734 483 ntBASIC21.57■■□□□ 1.04
TRIM13O60858 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.57■■□□□ 1.04
TRIM13O60858 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
TRIM13O60858 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TRIM13O60858 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.56■■□□□ 1.04
TRIM13O60858 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
TRIM13O60858 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.56■■□□□ 1.04
TRIM13O60858 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.56■■□□□ 1.04
TRIM13O60858 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.56■■□□□ 1.04
TRIM13O60858 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TRIM13O60858 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
TRIM13O60858 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRIM13O60858 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms