Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM1O00151 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.85■□□□□ 0.93
PDLIM1O00151 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PDLIM1O00151 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PDLIM1O00151 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PDLIM1O00151 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.84■□□□□ 0.93
PDLIM1O00151 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 AC079630.1-202ENST00000618127 1840 ntBASIC20.84■□□□□ 0.93
PDLIM1O00151 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.84■□□□□ 0.93
PDLIM1O00151 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 KRT8P33-201ENST00000508125 1423 ntBASIC20.84■□□□□ 0.93
PDLIM1O00151 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PDLIM1O00151 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
PDLIM1O00151 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PDLIM1O00151 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 AC080038.3-201ENST00000623346 1952 ntBASIC20.83■□□□□ 0.93
PDLIM1O00151 AL022069.1-201ENST00000568025 1636 ntBASIC20.83■□□□□ 0.93
PDLIM1O00151 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.83■□□□□ 0.93
PDLIM1O00151 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM1O00151 AC026310.3-201ENST00000625186 2373 ntBASIC20.83■□□□□ 0.93
PDLIM1O00151 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
PDLIM1O00151 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
PDLIM1O00151 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.83■□□□□ 0.92
PDLIM1O00151 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
PDLIM1O00151 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.83■□□□□ 0.92
PDLIM1O00151 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.83■□□□□ 0.92
PDLIM1O00151 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
PDLIM1O00151 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM1O00151 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM1O00151 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.82■□□□□ 0.92
PDLIM1O00151 YBX1P4-201ENST00000392794 808 ntBASIC20.82■□□□□ 0.92
PDLIM1O00151 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PDLIM1O00151 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PDLIM1O00151 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.82■□□□□ 0.92
PDLIM1O00151 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM1O00151 ALDH1A3-203ENST00000557963 1670 ntBASIC20.82■□□□□ 0.92
PDLIM1O00151 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PDLIM1O00151 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.82■□□□□ 0.92
PDLIM1O00151 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.82■□□□□ 0.92
PDLIM1O00151 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
PDLIM1O00151 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
PDLIM1O00151 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
PDLIM1O00151 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM1O00151 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM1O00151 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM1O00151 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM1O00151 AL592295.1-201ENST00000400984 884 ntBASIC20.81■□□□□ 0.92
PDLIM1O00151 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.81■□□□□ 0.92
PDLIM1O00151 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.81■□□□□ 0.92
PDLIM1O00151 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
PDLIM1O00151 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM1O00151 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.8■□□□□ 0.92
PDLIM1O00151 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.8■□□□□ 0.92
PDLIM1O00151 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
PDLIM1O00151 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM1O00151 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
PDLIM1O00151 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.79■□□□□ 0.92
PDLIM1O00151 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
PDLIM1O00151 AC103724.3-201ENST00000564481 992 ntBASIC20.79■□□□□ 0.92
PDLIM1O00151 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.79■□□□□ 0.92
PDLIM1O00151 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.79■□□□□ 0.92
PDLIM1O00151 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.79■□□□□ 0.92
PDLIM1O00151 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.79■□□□□ 0.92
PDLIM1O00151 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM1O00151 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.79■□□□□ 0.92
PDLIM1O00151 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM1O00151 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.78■□□□□ 0.92
PDLIM1O00151 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
PDLIM1O00151 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms