Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MKRN4P-201ENST00000444706 1521 ntBASIC17.39■□□□□ 0.37
COL6A5A8TX70 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.39■□□□□ 0.37
COL6A5A8TX70 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A5A8TX70 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.39■□□□□ 0.37
COL6A5A8TX70 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A5A8TX70 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
COL6A5A8TX70 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 MIR718-201ENST00000390190 70 ntBASIC17.38■□□□□ 0.37
COL6A5A8TX70 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 AC104187.1-201ENST00000607510 612 ntBASIC17.38■□□□□ 0.37
COL6A5A8TX70 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 CD37-213ENST00000598095 1598 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 KRT18P21-201ENST00000515767 1272 ntBASIC17.38■□□□□ 0.37
COL6A5A8TX70 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 KRT87P-202ENST00000534226 1464 ntBASIC17.38■□□□□ 0.37
COL6A5A8TX70 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL6A5A8TX70 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.38■□□□□ 0.37
COL6A5A8TX70 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.37■□□□□ 0.37
COL6A5A8TX70 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.37■□□□□ 0.37
COL6A5A8TX70 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.37■□□□□ 0.37
COL6A5A8TX70 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL6A5A8TX70 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
COL6A5A8TX70 AC079140.4-201ENST00000507448 529 ntBASIC17.36■□□□□ 0.37
COL6A5A8TX70 MYCNOS-205ENST00000641950 531 ntBASIC17.36■□□□□ 0.37
COL6A5A8TX70 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
COL6A5A8TX70 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A5A8TX70 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.35■□□□□ 0.37
COL6A5A8TX70 MYC-209ENST00000641252 345 ntBASIC17.35■□□□□ 0.37
COL6A5A8TX70 AC073648.6-201ENST00000641589 218 ntBASIC17.35■□□□□ 0.37
COL6A5A8TX70 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A5A8TX70 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL6A5A8TX70 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AC026366.1-201ENST00000488803 879 ntBASIC17.34■□□□□ 0.37
COL6A5A8TX70 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.34■□□□□ 0.37
COL6A5A8TX70 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
COL6A5A8TX70 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
COL6A5A8TX70 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A5A8TX70 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A5A8TX70 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A5A8TX70 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms