Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
PCDHGA1Q9Y5H4 AC004854.2-201ENST00000608450 1441 ntBASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 AC068587.7-201ENST00000641602 218 ntBASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 BX005040.4-201ENST00000637145 1518 ntBASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHGA1Q9Y5H4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 AL109923.1-201ENST00000618799 583 ntBASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.31■■□□□ 1
PCDHGA1Q9Y5H4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 ABHD17AP1-201ENST00000358206 933 ntBASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHGA1Q9Y5H4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 AP003733.4-201ENST00000623785 1697 ntBASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 NCF1B-203ENST00000435988 1254 ntBASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 CROCCP5-201ENST00000436658 830 ntBASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHGA1Q9Y5H4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHGA1Q9Y5H4 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 AL355802.2-201ENST00000402069 882 ntBASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA1Q9Y5H4 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
PCDHGA1Q9Y5H4 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms