Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 AC105265.2-201ENST00000467189 838 ntBASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 AL136967.2-201ENST00000623968 743 ntBASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 LINC00565-201ENST00000562710 2331 ntBASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PCDHB3Q9Y5E6 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 AF213884.3-201ENST00000563833 479 ntBASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHB3Q9Y5E6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHB3Q9Y5E6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 SERBP1P1-201ENST00000396021 1160 ntBASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 AC011298.3-201ENST00000615796 283 ntBASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PCDHB3Q9Y5E6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 AC091305.1-201ENST00000479476 895 ntBASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHB3Q9Y5E6 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 MIR939-201ENST00000401314 82 ntBASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 AC026271.2-201ENST00000428091 497 ntBASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 LINC00526-201ENST00000581067 1875 ntBASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHB3Q9Y5E6 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 GUSBP5-202ENST00000510805 1989 ntBASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
PCDHB3Q9Y5E6 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 AC104564.3-201ENST00000582367 638 ntBASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 MIR4767-201ENST00000582827 78 ntBASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDHB3Q9Y5E6 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDHB3Q9Y5E6 AP001330.3-201ENST00000520123 633 ntBASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms