Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC004854.2-201ENST00000608450 1441 ntBASIC20.06■□□□□ 0.8
SHANK1Q9Y566 AP004607.4-201ENST00000530158 1459 ntBASIC20.06■□□□□ 0.8
SHANK1Q9Y566 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHANK1Q9Y566 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.05■□□□□ 0.8
SHANK1Q9Y566 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.05■□□□□ 0.8
SHANK1Q9Y566 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHANK1Q9Y566 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 AC138932.3-201ENST00000567634 1902 ntBASIC20.04■□□□□ 0.8
SHANK1Q9Y566 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 LINC02228-203ENST00000641970 1355 ntBASIC20.04■□□□□ 0.8
SHANK1Q9Y566 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.04■□□□□ 0.8
SHANK1Q9Y566 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHANK1Q9Y566 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 NCF1B-203ENST00000435988 1254 ntBASIC20.02■□□□□ 0.8
SHANK1Q9Y566 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SHANK1Q9Y566 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SHANK1Q9Y566 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 AL109923.1-201ENST00000618799 583 ntBASIC20.01■□□□□ 0.79
SHANK1Q9Y566 AC105233.4-201ENST00000642045 216 ntBASIC20.01■□□□□ 0.79
SHANK1Q9Y566 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 BID-214ENST00000617586 542 ntTSL 5 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SHANK1Q9Y566 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20■□□□□ 0.79
SHANK1Q9Y566 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SHANK1Q9Y566 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 COX20-201ENST00000366528 568 ntTSL 2 BASIC20■□□□□ 0.79
SHANK1Q9Y566 AC006970.2-201ENST00000450065 779 ntBASIC20■□□□□ 0.79
SHANK1Q9Y566 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20■□□□□ 0.79
SHANK1Q9Y566 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 HLA-L-211ENST00000482052 1765 ntBASIC19.99■□□□□ 0.79
SHANK1Q9Y566 FP325331.1-202ENST00000623531 1380 ntBASIC19.99■□□□□ 0.79
SHANK1Q9Y566 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SHANK1Q9Y566 KRT19P1-201ENST00000405746 1186 ntBASIC19.98■□□□□ 0.79
SHANK1Q9Y566 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SHANK1Q9Y566 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms