Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 KRT8P33-201ENST00000508125 1423 ntBASIC20.87■□□□□ 0.93
VAPAQ9P0L0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
VAPAQ9P0L0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 AL033527.3-201ENST00000566366 1196 ntBASIC20.86■□□□□ 0.93
VAPAQ9P0L0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 AC012354.3-201ENST00000623734 483 ntBASIC20.86■□□□□ 0.93
VAPAQ9P0L0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VAPAQ9P0L0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
VAPAQ9P0L0 FP325331.1-202ENST00000623531 1380 ntBASIC20.85■□□□□ 0.93
VAPAQ9P0L0 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VAPAQ9P0L0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 AC005703.6-201ENST00000623265 1329 ntBASIC20.83■□□□□ 0.93
VAPAQ9P0L0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 YBX1P4-201ENST00000392794 808 ntBASIC20.83■□□□□ 0.93
VAPAQ9P0L0 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 MIR6722-201ENST00000617286 78 ntBASIC20.83■□□□□ 0.93
VAPAQ9P0L0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VAPAQ9P0L0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
VAPAQ9P0L0 LINC01960-201ENST00000563759 1884 ntBASIC20.81■□□□□ 0.92
VAPAQ9P0L0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VAPAQ9P0L0 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VAPAQ9P0L0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
VAPAQ9P0L0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms