Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 AC069152.1-201ENST00000438030 544 ntBASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.76■■□□□ 1.39
NKX2-4Q9H2Z4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 SLC29A4P1-201ENST00000398760 971 ntBASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 AC079140.4-201ENST00000507448 529 ntBASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 AC005181.1-201ENST00000604782 1256 ntBASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-4Q9H2Z4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC23.74■■□□□ 1.39
NKX2-4Q9H2Z4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 AC231657.2-201ENST00000624556 255 ntBASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 LINC01529-204ENST00000636474 1715 ntBASIC23.73■■□□□ 1.39
NKX2-4Q9H2Z4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 AC007322.1-201ENST00000426983 750 ntBASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 AC087239.1-201ENST00000622671 572 ntBASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.72■■□□□ 1.39
NKX2-4Q9H2Z4 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-4Q9H2Z4 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 DUX4L16-201ENST00000555130 1264 ntBASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 SMUG1P1-201ENST00000590640 811 ntBASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC23.7■■□□□ 1.38
NKX2-4Q9H2Z4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.69■■□□□ 1.38
NKX2-4Q9H2Z4 AC144652.1-201ENST00000609974 1624 ntBASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms