Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
LRCH3Q96II8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
LRCH3Q96II8 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
LRCH3Q96II8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
LRCH3Q96II8 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 AL022069.1-201ENST00000568025 1636 ntBASIC24.07■■□□□ 1.44
LRCH3Q96II8 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 AL158047.1-201ENST00000445918 881 ntBASIC24.07■■□□□ 1.44
LRCH3Q96II8 DUX4L16-201ENST00000555130 1264 ntBASIC24.07■■□□□ 1.44
LRCH3Q96II8 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
LRCH3Q96II8 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
LRCH3Q96II8 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.06■■□□□ 1.44
LRCH3Q96II8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRCH3Q96II8 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRCH3Q96II8 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRCH3Q96II8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.06■■□□□ 1.44
LRCH3Q96II8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC24.06■■□□□ 1.44
LRCH3Q96II8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC24.06■■□□□ 1.44
LRCH3Q96II8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
LRCH3Q96II8 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRCH3Q96II8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
LRCH3Q96II8 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC24.05■■□□□ 1.44
LRCH3Q96II8 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
LRCH3Q96II8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
LRCH3Q96II8 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
LRCH3Q96II8 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.04■■□□□ 1.44
LRCH3Q96II8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.04■■□□□ 1.44
LRCH3Q96II8 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC24.04■■□□□ 1.44
LRCH3Q96II8 ECEL1P3-201ENST00000427961 737 ntBASIC24.04■■□□□ 1.44
LRCH3Q96II8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
LRCH3Q96II8 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
LRCH3Q96II8 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LRCH3Q96II8 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
LRCH3Q96II8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC24.03■■□□□ 1.44
LRCH3Q96II8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.03■■□□□ 1.44
LRCH3Q96II8 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
LRCH3Q96II8 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
LRCH3Q96II8 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC24.03■■□□□ 1.44
LRCH3Q96II8 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
LRCH3Q96II8 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
LRCH3Q96II8 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
LRCH3Q96II8 AF201337.1-201ENST00000520239 748 ntBASIC24.02■■□□□ 1.44
LRCH3Q96II8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC24.02■■□□□ 1.44
LRCH3Q96II8 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
LRCH3Q96II8 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
LRCH3Q96II8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
LRCH3Q96II8 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.01■■□□□ 1.43
LRCH3Q96II8 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
LRCH3Q96II8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC24.01■■□□□ 1.43
LRCH3Q96II8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
LRCH3Q96II8 FAM210CP-201ENST00000445714 574 ntBASIC24.01■■□□□ 1.43
LRCH3Q96II8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
LRCH3Q96II8 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
LRCH3Q96II8 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
LRCH3Q96II8 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
LRCH3Q96II8 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
LRCH3Q96II8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24■■□□□ 1.43
LRCH3Q96II8 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC24■■□□□ 1.43
LRCH3Q96II8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24■■□□□ 1.43
LRCH3Q96II8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC24■■□□□ 1.43
LRCH3Q96II8 AC105036.2-201ENST00000569468 176 ntBASIC24■■□□□ 1.43
LRCH3Q96II8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC24■■□□□ 1.43
LRCH3Q96II8 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
LRCH3Q96II8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
LRCH3Q96II8 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
LRCH3Q96II8 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRCH3Q96II8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.99■■□□□ 1.43
LRCH3Q96II8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms