Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RPS4Y2Q8TD47 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RPS4Y2Q8TD47 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RPS4Y2Q8TD47 AC010542.4-201ENST00000563151 1910 ntBASIC19.33■□□□□ 0.69
RPS4Y2Q8TD47 FP325331.1-202ENST00000623531 1380 ntBASIC19.33■□□□□ 0.69
RPS4Y2Q8TD47 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
RPS4Y2Q8TD47 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RPS4Y2Q8TD47 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 AL024507.2-201ENST00000606070 2574 ntBASIC19.33■□□□□ 0.68
RPS4Y2Q8TD47 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 AC026310.3-201ENST00000625186 2373 ntBASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 LINC01529-204ENST00000636474 1715 ntBASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.32■□□□□ 0.68
RPS4Y2Q8TD47 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPS4Y2Q8TD47 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
RPS4Y2Q8TD47 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RPS4Y2Q8TD47 FAM99A-202ENST00000538190 1989 ntBASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 MIR4508-201ENST00000584178 70 ntBASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 AC010980.1-201ENST00000587192 1142 ntBASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 LINC01960-201ENST00000563759 1884 ntBASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.28■□□□□ 0.68
RPS4Y2Q8TD47 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y2Q8TD47 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms