Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
CLHC1Q8NHS4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CLHC1Q8NHS4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
CLHC1Q8NHS4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLHC1Q8NHS4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 AC087742.1-201ENST00000575880 1738 ntBASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLHC1Q8NHS4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 AC009299.2-201ENST00000482477 511 ntBASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 Z92544.1-202ENST00000571933 1220 ntBASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 AL451085.2-201ENST00000605085 799 ntBASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLHC1Q8NHS4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 AC139530.1-201ENST00000575312 1977 ntBASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 AC009102.2-201ENST00000606772 1639 ntBASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLHC1Q8NHS4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.1■□□□□ 0.97
CLHC1Q8NHS4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 AC010997.5-201ENST00000609182 354 ntBASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CLHC1Q8NHS4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.08■□□□□ 0.97
CLHC1Q8NHS4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms