Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.87■■□□□ 1.09
NUDCD3Q8IVD9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 THA1P-201ENST00000590384 1145 ntBASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
NUDCD3Q8IVD9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.85■■□□□ 1.09
NUDCD3Q8IVD9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
NUDCD3Q8IVD9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUDCD3Q8IVD9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.83■■□□□ 1.08
NUDCD3Q8IVD9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 BHLHE23-202ENST00000612929 1109 ntBASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.82■■□□□ 1.08
NUDCD3Q8IVD9 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.81■■□□□ 1.08
NUDCD3Q8IVD9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 AC026310.3-201ENST00000625186 2373 ntBASIC21.8■■□□□ 1.08
NUDCD3Q8IVD9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUDCD3Q8IVD9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
NUDCD3Q8IVD9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUDCD3Q8IVD9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
NUDCD3Q8IVD9 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.79■■□□□ 1.08
NUDCD3Q8IVD9 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms