Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.01■■□□□ 1.11
LDB1Q86U70 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
LDB1Q86U70 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.01■■□□□ 1.11
LDB1Q86U70 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LDB1Q86U70 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
LDB1Q86U70 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.01■■□□□ 1.11
LDB1Q86U70 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22■■□□□ 1.11
LDB1Q86U70 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22■■□□□ 1.11
LDB1Q86U70 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22■■□□□ 1.11
LDB1Q86U70 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22■■□□□ 1.11
LDB1Q86U70 AC009086.3-201ENST00000623486 1008 ntBASIC22■■□□□ 1.11
LDB1Q86U70 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22■■□□□ 1.11
LDB1Q86U70 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22■■□□□ 1.11
LDB1Q86U70 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22■■□□□ 1.11
LDB1Q86U70 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LDB1Q86U70 AC087742.1-201ENST00000575880 1738 ntBASIC22■■□□□ 1.11
LDB1Q86U70 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22■■□□□ 1.11
LDB1Q86U70 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB1Q86U70 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB1Q86U70 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.99■■□□□ 1.11
LDB1Q86U70 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.99■■□□□ 1.11
LDB1Q86U70 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.99■■□□□ 1.11
LDB1Q86U70 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
LDB1Q86U70 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB1Q86U70 MIR4466-201ENST00000606121 54 ntBASIC21.99■■□□□ 1.11
LDB1Q86U70 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.99■■□□□ 1.11
LDB1Q86U70 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.99■■□□□ 1.11
LDB1Q86U70 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
LDB1Q86U70 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
LDB1Q86U70 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
LDB1Q86U70 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.98■■□□□ 1.11
LDB1Q86U70 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LDB1Q86U70 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LDB1Q86U70 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.98■■□□□ 1.11
LDB1Q86U70 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.98■■□□□ 1.11
LDB1Q86U70 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
LDB1Q86U70 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LDB1Q86U70 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.98■■□□□ 1.11
LDB1Q86U70 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LDB1Q86U70 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.97■■□□□ 1.11
LDB1Q86U70 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.97■■□□□ 1.11
LDB1Q86U70 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.97■■□□□ 1.11
LDB1Q86U70 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.97■■□□□ 1.11
LDB1Q86U70 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.97■■□□□ 1.11
LDB1Q86U70 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
LDB1Q86U70 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
LDB1Q86U70 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.97■■□□□ 1.11
LDB1Q86U70 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
LDB1Q86U70 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 AC131281.2-201ENST00000520478 145 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 pRNA.6-201ENST00000610482 90 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 pRNA.5-201ENST00000612139 90 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 pRNA.11-201ENST00000618423 90 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 pRNA.13-201ENST00000619112 90 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 AC241377.3-202ENST00000626088 1088 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 AC241585.3-202ENST00000628937 1088 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 AC245100.8-202ENST00000629247 1058 ntBASIC21.96■■□□□ 1.11
LDB1Q86U70 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
LDB1Q86U70 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
LDB1Q86U70 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LDB1Q86U70 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
LDB1Q86U70 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.96■■□□□ 1.11
LDB1Q86U70 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.95■■□□□ 1.11
LDB1Q86U70 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
LDB1Q86U70 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms