Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 LINC00565-201ENST00000562710 2331 ntBASIC23.07■■□□□ 1.28
RNF43Q68DV7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RNF43Q68DV7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.07■■□□□ 1.28
RNF43Q68DV7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.07■■□□□ 1.28
RNF43Q68DV7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.07■■□□□ 1.28
RNF43Q68DV7 MIR3181-201ENST00000578512 73 ntBASIC23.07■■□□□ 1.28
RNF43Q68DV7 MIR4767-201ENST00000582827 78 ntBASIC23.07■■□□□ 1.28
RNF43Q68DV7 AC136469.2-201ENST00000623944 1028 ntBASIC23.07■■□□□ 1.28
RNF43Q68DV7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC23.07■■□□□ 1.28
RNF43Q68DV7 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RNF43Q68DV7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
RNF43Q68DV7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RNF43Q68DV7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RNF43Q68DV7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.06■■□□□ 1.28
RNF43Q68DV7 MIR939-201ENST00000401314 82 ntBASIC23.06■■□□□ 1.28
RNF43Q68DV7 AP001330.3-201ENST00000520123 633 ntBASIC23.06■■□□□ 1.28
RNF43Q68DV7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.06■■□□□ 1.28
RNF43Q68DV7 AC087623.3-201ENST00000607047 1098 ntBASIC23.06■■□□□ 1.28
RNF43Q68DV7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
RNF43Q68DV7 AC233723.2-201ENST00000623798 2106 ntBASIC23.06■■□□□ 1.28
RNF43Q68DV7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.06■■□□□ 1.28
RNF43Q68DV7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF43Q68DV7 EP400NL-214ENST00000641289 2402 ntBASIC23.06■■□□□ 1.28
RNF43Q68DV7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.05■■□□□ 1.28
RNF43Q68DV7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF43Q68DV7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RNF43Q68DV7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.04■■□□□ 1.28
RNF43Q68DV7 FP325331.1-202ENST00000623531 1380 ntBASIC23.04■■□□□ 1.28
RNF43Q68DV7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.04■■□□□ 1.28
RNF43Q68DV7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF43Q68DV7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.04■■□□□ 1.28
RNF43Q68DV7 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF43Q68DV7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF43Q68DV7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
RNF43Q68DV7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF43Q68DV7 AC091305.1-201ENST00000479476 895 ntBASIC23.03■■□□□ 1.28
RNF43Q68DV7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF43Q68DV7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.03■■□□□ 1.28
RNF43Q68DV7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF43Q68DV7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.02■■□□□ 1.28
RNF43Q68DV7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
RNF43Q68DV7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
RNF43Q68DV7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.02■■□□□ 1.28
RNF43Q68DV7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
RNF43Q68DV7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF43Q68DV7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.27
RNF43Q68DV7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
RNF43Q68DV7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
RNF43Q68DV7 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 DUX4L4-201ENST00000566884 1269 ntBASIC23.01■■□□□ 1.27
RNF43Q68DV7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RNF43Q68DV7 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
RNF43Q68DV7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23■■□□□ 1.27
RNF43Q68DV7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
RNF43Q68DV7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23■■□□□ 1.27
RNF43Q68DV7 AL499627.2-201ENST00000606283 725 ntBASIC23■■□□□ 1.27
RNF43Q68DV7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms