Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR6821-201ENST00000617625 74 ntBASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 AC131274.2-201ENST00000580697 1507 ntBASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PDLIM3Q53GG5 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 C1orf229-201ENST00000623686 2258 ntBASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PDLIM3Q53GG5 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 AL162430.1-201ENST00000480705 870 ntBASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 MIR6724-1-201ENST00000616420 92 ntBASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 MIR6724-2-201ENST00000616483 92 ntBASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 MIR6724-4-201ENST00000617390 92 ntBASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 MIR6724-3-201ENST00000622482 92 ntBASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.15■□□□□ 0.5
PDLIM3Q53GG5 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDLIM3Q53GG5 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.14■□□□□ 0.5
PDLIM3Q53GG5 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PDLIM3Q53GG5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 KRT18P24-201ENST00000344739 1156 ntBASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
PDLIM3Q53GG5 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 AC010997.5-201ENST00000609182 354 ntBASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 RARRES2P11-201ENST00000635158 484 ntBASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
PDLIM3Q53GG5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 ECEL1P1-201ENST00000373592 1742 ntBASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 SUDS3P1-201ENST00000505831 966 ntBASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PDLIM3Q53GG5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
PDLIM3Q53GG5 AC127496.7-201ENST00000625110 1798 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms