Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC133041.1-202ENST00000642053 222 ntBASIC13.94□□□□□ -0.18
HSPG2P98160 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HSPG2P98160 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC13.94□□□□□ -0.18
HSPG2P98160 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HSPG2P98160 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HSPG2P98160 APTR-203ENST00000430801 583 ntTSL 5 BASIC13.94□□□□□ -0.18
HSPG2P98160 RARRES2P4-201ENST00000514074 484 ntBASIC13.94□□□□□ -0.18
HSPG2P98160 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HSPG2P98160 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
HSPG2P98160 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
HSPG2P98160 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HSPG2P98160 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
HSPG2P98160 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.93□□□□□ -0.18
HSPG2P98160 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.93□□□□□ -0.18
HSPG2P98160 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC13.93□□□□□ -0.18
HSPG2P98160 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
HSPG2P98160 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HSPG2P98160 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC13.92□□□□□ -0.18
HSPG2P98160 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC13.92□□□□□ -0.18
HSPG2P98160 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC13.92□□□□□ -0.18
HSPG2P98160 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
HSPG2P98160 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
HSPG2P98160 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
HSPG2P98160 TESC-206ENST00000541210 936 ntTSL 3 BASIC13.92□□□□□ -0.18
HSPG2P98160 AC083880.1-201ENST00000608266 535 ntBASIC13.92□□□□□ -0.18
HSPG2P98160 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HSPG2P98160 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HSPG2P98160 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
HSPG2P98160 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
HSPG2P98160 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC13.91□□□□□ -0.18
HSPG2P98160 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
HSPG2P98160 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
HSPG2P98160 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC13.91□□□□□ -0.18
HSPG2P98160 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC13.91□□□□□ -0.18
HSPG2P98160 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC13.91□□□□□ -0.18
HSPG2P98160 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC13.91□□□□□ -0.18
HSPG2P98160 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
HSPG2P98160 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC13.9□□□□□ -0.18
HSPG2P98160 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
HSPG2P98160 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 PPP1R14BP2-201ENST00000426284 444 ntBASIC13.9□□□□□ -0.18
HSPG2P98160 RHOD-202ENST00000532559 538 ntTSL 3 BASIC13.9□□□□□ -0.18
HSPG2P98160 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC13.9□□□□□ -0.18
HSPG2P98160 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
HSPG2P98160 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
HSPG2P98160 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
HSPG2P98160 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC13.9□□□□□ -0.19
HSPG2P98160 UQCRFS1P1-201ENST00000435169 820 ntBASIC13.9□□□□□ -0.19
HSPG2P98160 UNC93B4-201ENST00000505679 747 ntBASIC13.9□□□□□ -0.19
HSPG2P98160 USP36-216ENST00000589424 970 ntTSL 5 BASIC13.9□□□□□ -0.19
HSPG2P98160 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
HSPG2P98160 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC13.89□□□□□ -0.19
HSPG2P98160 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 BRI3-207ENST00000539286 699 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC13.89□□□□□ -0.19
HSPG2P98160 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
HSPG2P98160 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
HSPG2P98160 KRT87P-202ENST00000534226 1464 ntBASIC13.89□□□□□ -0.19
HSPG2P98160 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC13.89□□□□□ -0.19
HSPG2P98160 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
HSPG2P98160 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms