Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CX3CL1P78423 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.7■□□□□ 0.42
CX3CL1P78423 AC131212.1-201ENST00000613771 668 ntBASIC17.7■□□□□ 0.42
CX3CL1P78423 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CL1P78423 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.7■□□□□ 0.42
CX3CL1P78423 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CX3CL1P78423 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CX3CL1P78423 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.7■□□□□ 0.42
CX3CL1P78423 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CX3CL1P78423 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CX3CL1P78423 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.69■□□□□ 0.42
CX3CL1P78423 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.69■□□□□ 0.42
CX3CL1P78423 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.69■□□□□ 0.42
CX3CL1P78423 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC17.69■□□□□ 0.42
CX3CL1P78423 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.69■□□□□ 0.42
CX3CL1P78423 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 EP400NL-214ENST00000641289 2402 ntBASIC17.69■□□□□ 0.42
CX3CL1P78423 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CX3CL1P78423 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CX3CL1P78423 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CL1P78423 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CL1P78423 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.68■□□□□ 0.42
CX3CL1P78423 DUX4L4-201ENST00000566884 1269 ntBASIC17.68■□□□□ 0.42
CX3CL1P78423 AL512631.2-201ENST00000604634 923 ntBASIC17.68■□□□□ 0.42
CX3CL1P78423 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.68■□□□□ 0.42
CX3CL1P78423 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CX3CL1P78423 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CX3CL1P78423 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.68■□□□□ 0.42
CX3CL1P78423 AC233723.2-201ENST00000623798 2106 ntBASIC17.68■□□□□ 0.42
CX3CL1P78423 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CX3CL1P78423 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.67■□□□□ 0.42
CX3CL1P78423 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CX3CL1P78423 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CX3CL1P78423 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CX3CL1P78423 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CX3CL1P78423 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 SRD5A1P1-201ENST00000442297 786 ntBASIC17.67■□□□□ 0.42
CX3CL1P78423 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
CX3CL1P78423 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CX3CL1P78423 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.66■□□□□ 0.42
CX3CL1P78423 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC17.66■□□□□ 0.42
CX3CL1P78423 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.66■□□□□ 0.42
CX3CL1P78423 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 AC241377.3-202ENST00000626088 1088 ntBASIC17.66■□□□□ 0.42
CX3CL1P78423 AC241585.3-202ENST00000628937 1088 ntBASIC17.66■□□□□ 0.42
CX3CL1P78423 AC245100.8-202ENST00000629247 1058 ntBASIC17.66■□□□□ 0.42
CX3CL1P78423 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.66■□□□□ 0.42
CX3CL1P78423 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CX3CL1P78423 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CX3CL1P78423 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CX3CL1P78423 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CX3CL1P78423 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CX3CL1P78423 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CX3CL1P78423 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CX3CL1P78423 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.65■□□□□ 0.42
CX3CL1P78423 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.65■□□□□ 0.42
CX3CL1P78423 MIR4466-201ENST00000606121 54 ntBASIC17.65■□□□□ 0.42
CX3CL1P78423 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CX3CL1P78423 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.65■□□□□ 0.42
CX3CL1P78423 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CX3CL1P78423 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CX3CL1P78423 AL024507.2-201ENST00000606070 2574 ntBASIC17.65■□□□□ 0.42
CX3CL1P78423 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CX3CL1P78423 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CX3CL1P78423 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.64■□□□□ 0.42
CX3CL1P78423 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CX3CL1P78423 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.64■□□□□ 0.42
CX3CL1P78423 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms