Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LSM3P62310 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
LSM3P62310 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.87■□□□□ 0.77
LSM3P62310 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LSM3P62310 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LSM3P62310 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
LSM3P62310 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LSM3P62310 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.86■□□□□ 0.77
LSM3P62310 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LSM3P62310 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.86■□□□□ 0.77
LSM3P62310 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LSM3P62310 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM3P62310 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.85■□□□□ 0.77
LSM3P62310 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LSM3P62310 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.85■□□□□ 0.77
LSM3P62310 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM3P62310 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM3P62310 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LSM3P62310 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM3P62310 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LSM3P62310 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM3P62310 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM3P62310 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM3P62310 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.84■□□□□ 0.77
LSM3P62310 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.84■□□□□ 0.77
LSM3P62310 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LSM3P62310 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
LSM3P62310 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
LSM3P62310 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LSM3P62310 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.84■□□□□ 0.77
LSM3P62310 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.83■□□□□ 0.77
LSM3P62310 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM3P62310 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
LSM3P62310 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM3P62310 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LSM3P62310 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.77
LSM3P62310 AC090877.2-201ENST00000558441 1738 ntBASIC19.83■□□□□ 0.77
LSM3P62310 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.83■□□□□ 0.77
LSM3P62310 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LSM3P62310 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM3P62310 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LSM3P62310 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LSM3P62310 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LSM3P62310 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.82■□□□□ 0.76
LSM3P62310 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LSM3P62310 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.81■□□□□ 0.76
LSM3P62310 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
LSM3P62310 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
LSM3P62310 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
LSM3P62310 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LSM3P62310 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LSM3P62310 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.81■□□□□ 0.76
LSM3P62310 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.81■□□□□ 0.76
LSM3P62310 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
LSM3P62310 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
LSM3P62310 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
LSM3P62310 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM3P62310 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM3P62310 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM3P62310 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.8■□□□□ 0.76
LSM3P62310 ALDH1A3-203ENST00000557963 1670 ntBASIC19.8■□□□□ 0.76
LSM3P62310 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LSM3P62310 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
LSM3P62310 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LSM3P62310 AL022069.1-201ENST00000568025 1636 ntBASIC19.8■□□□□ 0.76
LSM3P62310 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.79■□□□□ 0.76
LSM3P62310 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.79■□□□□ 0.76
LSM3P62310 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.79■□□□□ 0.76
LSM3P62310 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.79■□□□□ 0.76
LSM3P62310 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LSM3P62310 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms