Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA1P55317 FP325331.1-202ENST00000623531 1380 ntBASIC21.41■■□□□ 1.02
FOXA1P55317 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
FOXA1P55317 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA1P55317 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA1P55317 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA1P55317 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
FOXA1P55317 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
FOXA1P55317 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA1P55317 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.4■■□□□ 1.02
FOXA1P55317 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.4■■□□□ 1.02
FOXA1P55317 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA1P55317 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
FOXA1P55317 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
FOXA1P55317 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.39■■□□□ 1.02
FOXA1P55317 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
FOXA1P55317 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
FOXA1P55317 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.39■■□□□ 1.02
FOXA1P55317 C11orf96-202ENST00000528572 1834 ntBASIC21.39■■□□□ 1.02
FOXA1P55317 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXA1P55317 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.39■■□□□ 1.01
FOXA1P55317 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXA1P55317 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXA1P55317 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.39■■□□□ 1.01
FOXA1P55317 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
FOXA1P55317 AC009102.2-201ENST00000606772 1639 ntBASIC21.39■■□□□ 1.01
FOXA1P55317 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
FOXA1P55317 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.38■■□□□ 1.01
FOXA1P55317 RARRES2P1-201ENST00000474487 481 ntBASIC21.38■■□□□ 1.01
FOXA1P55317 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
FOXA1P55317 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
FOXA1P55317 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.38■■□□□ 1.01
FOXA1P55317 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.38■■□□□ 1.01
FOXA1P55317 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
FOXA1P55317 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA1P55317 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA1P55317 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA1P55317 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.37■■□□□ 1.01
FOXA1P55317 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.37■■□□□ 1.01
FOXA1P55317 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
FOXA1P55317 DUX4L4-201ENST00000566884 1269 ntBASIC21.37■■□□□ 1.01
FOXA1P55317 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA1P55317 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
FOXA1P55317 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
FOXA1P55317 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.36■■□□□ 1.01
FOXA1P55317 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
FOXA1P55317 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
FOXA1P55317 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
FOXA1P55317 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA1P55317 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA1P55317 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
FOXA1P55317 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
FOXA1P55317 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.35■■□□□ 1.01
FOXA1P55317 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.35■■□□□ 1.01
FOXA1P55317 KRT125P-201ENST00000546827 989 ntBASIC21.35■■□□□ 1.01
FOXA1P55317 Z92544.1-202ENST00000571933 1220 ntBASIC21.35■■□□□ 1.01
FOXA1P55317 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.35■■□□□ 1.01
FOXA1P55317 MIR4787-201ENST00000607364 84 ntBASIC21.35■■□□□ 1.01
FOXA1P55317 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.35■■□□□ 1.01
FOXA1P55317 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA1P55317 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
FOXA1P55317 LINC01960-201ENST00000563759 1884 ntBASIC21.35■■□□□ 1.01
FOXA1P55317 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
FOXA1P55317 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
FOXA1P55317 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXA1P55317 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.34■■□□□ 1.01
FOXA1P55317 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.34■■□□□ 1.01
FOXA1P55317 MTDHP2-201ENST00000601468 714 ntBASIC21.34■■□□□ 1.01
FOXA1P55317 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
FOXA1P55317 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
FOXA1P55317 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.34■■□□□ 1.01
FOXA1P55317 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
FOXA1P55317 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA1P55317 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
FOXA1P55317 AC239859.2-201ENST00000444165 318 ntBASIC21.33■■□□□ 1.01
FOXA1P55317 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
FOXA1P55317 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.33■■□□□ 1.01
FOXA1P55317 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.33■■□□□ 1
FOXA1P55317 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.33■■□□□ 1
FOXA1P55317 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
FOXA1P55317 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
FOXA1P55317 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXA1P55317 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
FOXA1P55317 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.32■■□□□ 1
FOXA1P55317 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.32■■□□□ 1
FOXA1P55317 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.32■■□□□ 1
FOXA1P55317 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
FOXA1P55317 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms