Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
PTPN9P43378 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
PTPN9P43378 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.27
PTPN9P43378 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
PTPN9P43378 AC011298.3-201ENST00000615796 283 ntBASIC23■■□□□ 1.27
PTPN9P43378 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23■■□□□ 1.27
PTPN9P43378 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
PTPN9P43378 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23■■□□□ 1.27
PTPN9P43378 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.99■■□□□ 1.27
PTPN9P43378 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.99■■□□□ 1.27
PTPN9P43378 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
PTPN9P43378 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN9P43378 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.99■■□□□ 1.27
PTPN9P43378 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN9P43378 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.99■■□□□ 1.27
PTPN9P43378 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.99■■□□□ 1.27
PTPN9P43378 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.99■■□□□ 1.27
PTPN9P43378 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.99■■□□□ 1.27
PTPN9P43378 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
PTPN9P43378 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
PTPN9P43378 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC22.99■■□□□ 1.27
PTPN9P43378 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC22.98■■□□□ 1.27
PTPN9P43378 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 AC087742.1-201ENST00000575880 1738 ntBASIC22.98■■□□□ 1.27
PTPN9P43378 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.98■■□□□ 1.27
PTPN9P43378 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
PTPN9P43378 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 LINC01960-201ENST00000563759 1884 ntBASIC22.97■■□□□ 1.27
PTPN9P43378 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.97■■□□□ 1.27
PTPN9P43378 AC136469.2-201ENST00000623944 1028 ntBASIC22.97■■□□□ 1.27
PTPN9P43378 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC22.97■■□□□ 1.27
PTPN9P43378 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.97■■□□□ 1.27
PTPN9P43378 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.97■■□□□ 1.27
PTPN9P43378 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
PTPN9P43378 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTPN9P43378 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTPN9P43378 AC233723.2-201ENST00000623798 2106 ntBASIC22.96■■□□□ 1.27
PTPN9P43378 OR2I1P-207ENST00000453522 948 ntBASIC22.96■■□□□ 1.27
PTPN9P43378 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.96■■□□□ 1.27
PTPN9P43378 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
PTPN9P43378 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.96■■□□□ 1.27
PTPN9P43378 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.96■■□□□ 1.27
PTPN9P43378 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
PTPN9P43378 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PTPN9P43378 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTPN9P43378 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PTPN9P43378 AC127496.7-201ENST00000625110 1798 ntBASIC22.96■■□□□ 1.27
PTPN9P43378 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
PTPN9P43378 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
PTPN9P43378 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.95■■□□□ 1.26
PTPN9P43378 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
PTPN9P43378 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
PTPN9P43378 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
PTPN9P43378 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
PTPN9P43378 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTPN9P43378 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.94■■□□□ 1.26
PTPN9P43378 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.94■■□□□ 1.26
PTPN9P43378 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.94■■□□□ 1.26
PTPN9P43378 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC22.94■■□□□ 1.26
PTPN9P43378 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
PTPN9P43378 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.94■■□□□ 1.26
PTPN9P43378 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.94■■□□□ 1.26
PTPN9P43378 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.94■■□□□ 1.26
PTPN9P43378 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.94■■□□□ 1.26
PTPN9P43378 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
PTPN9P43378 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
PTPN9P43378 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTPN9P43378 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTPN9P43378 UNC93B3-201ENST00000308076 687 ntBASIC22.93■■□□□ 1.26
PTPN9P43378 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.93■■□□□ 1.26
PTPN9P43378 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.93■■□□□ 1.26
PTPN9P43378 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTPN9P43378 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC22.93■■□□□ 1.26
PTPN9P43378 AL031602.1-201ENST00000633169 911 ntBASIC22.93■■□□□ 1.26
PTPN9P43378 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PTPN9P43378 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
PTPN9P43378 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTPN9P43378 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTPN9P43378 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTPN9P43378 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTPN9P43378 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PTPN9P43378 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms