Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 DUX4L9-201ENST00000449051 1259 ntBASIC21.03■□□□□ 0.96
MSX2P35548 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.03■□□□□ 0.96
MSX2P35548 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSX2P35548 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
MSX2P35548 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MSX2P35548 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.02■□□□□ 0.96
MSX2P35548 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 MIR6765-201ENST00000614092 87 ntBASIC21.02■□□□□ 0.96
MSX2P35548 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
MSX2P35548 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.02■□□□□ 0.96
MSX2P35548 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MSX2P35548 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
MSX2P35548 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX2P35548 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MSX2P35548 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX2P35548 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.01■□□□□ 0.95
MSX2P35548 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.01■□□□□ 0.95
MSX2P35548 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
MSX2P35548 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
MSX2P35548 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX2P35548 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.01■□□□□ 0.95
MSX2P35548 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.01■□□□□ 0.95
MSX2P35548 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MSX2P35548 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21■□□□□ 0.95
MSX2P35548 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MSX2P35548 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21■□□□□ 0.95
MSX2P35548 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21■□□□□ 0.95
MSX2P35548 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21■□□□□ 0.95
MSX2P35548 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MSX2P35548 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MSX2P35548 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX2P35548 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX2P35548 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.99■□□□□ 0.95
MSX2P35548 AC011551.1-201ENST00000614101 683 ntBASIC20.99■□□□□ 0.95
MSX2P35548 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MSX2P35548 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
MSX2P35548 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.98■□□□□ 0.95
MSX2P35548 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSX2P35548 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.98■□□□□ 0.95
MSX2P35548 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSX2P35548 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.98■□□□□ 0.95
MSX2P35548 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.98■□□□□ 0.95
MSX2P35548 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSX2P35548 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSX2P35548 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSX2P35548 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.97■□□□□ 0.95
MSX2P35548 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSX2P35548 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.97■□□□□ 0.95
MSX2P35548 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.97■□□□□ 0.95
MSX2P35548 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.97■□□□□ 0.95
MSX2P35548 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSX2P35548 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.96■□□□□ 0.95
MSX2P35548 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
MSX2P35548 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
MSX2P35548 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
MSX2P35548 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSX2P35548 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
MSX2P35548 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSX2P35548 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.95■□□□□ 0.94
MSX2P35548 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms