Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHMT2P34897 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.58■■□□□ 1.05
SHMT2P34897 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
SHMT2P34897 AC136469.2-201ENST00000623944 1028 ntBASIC21.58■■□□□ 1.05
SHMT2P34897 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
SHMT2P34897 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
SHMT2P34897 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.58■■□□□ 1.04
SHMT2P34897 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.58■■□□□ 1.04
SHMT2P34897 AC092068.2-201ENST00000590491 1708 ntBASIC21.58■■□□□ 1.04
SHMT2P34897 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
SHMT2P34897 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
SHMT2P34897 AL117328.2-201ENST00000624617 1940 ntBASIC21.57■■□□□ 1.04
SHMT2P34897 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHMT2P34897 MIR638-201ENST00000385237 100 ntBASIC21.57■■□□□ 1.04
SHMT2P34897 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.57■■□□□ 1.04
SHMT2P34897 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SHMT2P34897 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.57■■□□□ 1.04
SHMT2P34897 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHMT2P34897 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SHMT2P34897 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SHMT2P34897 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.56■■□□□ 1.04
SHMT2P34897 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.56■■□□□ 1.04
SHMT2P34897 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.56■■□□□ 1.04
SHMT2P34897 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SHMT2P34897 AL353803.4-201ENST00000565882 1934 ntBASIC21.56■■□□□ 1.04
SHMT2P34897 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
SHMT2P34897 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.56■■□□□ 1.04
SHMT2P34897 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHMT2P34897 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SHMT2P34897 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SHMT2P34897 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.55■■□□□ 1.04
SHMT2P34897 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
SHMT2P34897 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 EDA-201ENST00000338901 1233 ntBASIC21.55■■□□□ 1.04
SHMT2P34897 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 MIR4767-201ENST00000582827 78 ntBASIC21.55■■□□□ 1.04
SHMT2P34897 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.55■■□□□ 1.04
SHMT2P34897 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
SHMT2P34897 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.55■■□□□ 1.04
SHMT2P34897 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHMT2P34897 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.55■■□□□ 1.04
SHMT2P34897 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.55■■□□□ 1.04
SHMT2P34897 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHMT2P34897 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
SHMT2P34897 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHMT2P34897 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.54■■□□□ 1.04
SHMT2P34897 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.54■■□□□ 1.04
SHMT2P34897 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHMT2P34897 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.54■■□□□ 1.04
SHMT2P34897 AC133637.1-201ENST00000624115 1537 ntBASIC21.54■■□□□ 1.04
SHMT2P34897 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHMT2P34897 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHMT2P34897 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHMT2P34897 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHMT2P34897 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHMT2P34897 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.53■■□□□ 1.04
SHMT2P34897 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.53■■□□□ 1.04
SHMT2P34897 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
SHMT2P34897 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SHMT2P34897 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.52■■□□□ 1.04
SHMT2P34897 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.52■■□□□ 1.04
SHMT2P34897 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.52■■□□□ 1.04
SHMT2P34897 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.52■■□□□ 1.04
SHMT2P34897 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.52■■□□□ 1.04
SHMT2P34897 AL355001.2-201ENST00000620617 1191 ntBASIC21.52■■□□□ 1.04
SHMT2P34897 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.52■■□□□ 1.04
SHMT2P34897 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SHMT2P34897 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHMT2P34897 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
SHMT2P34897 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.51■■□□□ 1.03
SHMT2P34897 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.51■■□□□ 1.03
SHMT2P34897 AC005837.3-201ENST00000612163 286 ntBASIC21.51■■□□□ 1.03
SHMT2P34897 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.51■■□□□ 1.03
SHMT2P34897 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.51■■□□□ 1.03
SHMT2P34897 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHMT2P34897 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms