Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGB1P09429 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.07■■□□□ 1.76
HMGB1P09429 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
HMGB1P09429 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGB1P09429 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
HMGB1P09429 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.07■■□□□ 1.76
HMGB1P09429 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.07■■□□□ 1.76
HMGB1P09429 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
HMGB1P09429 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
HMGB1P09429 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.06■■□□□ 1.76
HMGB1P09429 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 MIR4466-201ENST00000606121 54 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 pRNA.6-201ENST00000610482 90 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 pRNA.5-201ENST00000612139 90 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 pRNA.11-201ENST00000618423 90 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 pRNA.13-201ENST00000619112 90 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26.06■■□□□ 1.76
HMGB1P09429 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
HMGB1P09429 LINC01960-201ENST00000563759 1884 ntBASIC26.06■■□□□ 1.76
HMGB1P09429 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
HMGB1P09429 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.05■■□□□ 1.76
HMGB1P09429 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HMGB1P09429 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
HMGB1P09429 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HMGB1P09429 AC133637.1-201ENST00000624115 1537 ntBASIC26.05■■□□□ 1.76
HMGB1P09429 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HMGB1P09429 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.05■■□□□ 1.76
HMGB1P09429 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC26.05■■□□□ 1.76
HMGB1P09429 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.05■■□□□ 1.76
HMGB1P09429 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC26.05■■□□□ 1.76
HMGB1P09429 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
HMGB1P09429 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
HMGB1P09429 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
HMGB1P09429 AC131281.2-201ENST00000520478 145 ntBASIC26.04■■□□□ 1.76
HMGB1P09429 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HMGB1P09429 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
HMGB1P09429 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC26.04■■□□□ 1.76
HMGB1P09429 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
HMGB1P09429 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
HMGB1P09429 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 DUX4L19-201ENST00000557448 1267 ntBASIC26.03■■□□□ 1.76
HMGB1P09429 MIR3181-201ENST00000578512 73 ntBASIC26.03■■□□□ 1.76
HMGB1P09429 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
HMGB1P09429 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.76
HMGB1P09429 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC26.03■■□□□ 1.76
HMGB1P09429 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC26.03■■□□□ 1.76
HMGB1P09429 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
HMGB1P09429 AC242852.2-201ENST00000615738 1807 ntBASIC26.02■■□□□ 1.76
HMGB1P09429 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HMGB1P09429 TERT-206ENST00000508104 2486 ntTSL 5 BASIC26.02■■□□□ 1.76
HMGB1P09429 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HMGB1P09429 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.02■■□□□ 1.76
HMGB1P09429 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC26.02■■□□□ 1.76
HMGB1P09429 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC26.02■■□□□ 1.76
HMGB1P09429 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.02■■□□□ 1.76
HMGB1P09429 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
HMGB1P09429 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
HMGB1P09429 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
HMGB1P09429 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
HMGB1P09429 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
HMGB1P09429 ECEL1P1-201ENST00000373592 1742 ntBASIC26.01■■□□□ 1.75
HMGB1P09429 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
HMGB1P09429 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC26.01■■□□□ 1.75
HMGB1P09429 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
HMGB1P09429 AC079834.2-201ENST00000609776 1949 ntBASIC26.01■■□□□ 1.75
HMGB1P09429 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.75
HMGB1P09429 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
HMGB1P09429 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HMGB1P09429 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26■■□□□ 1.75
HMGB1P09429 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
HMGB1P09429 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26■■□□□ 1.75
HMGB1P09429 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
HMGB1P09429 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26■■□□□ 1.75
HMGB1P09429 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
HMGB1P09429 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC26■■□□□ 1.75
HMGB1P09429 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
HMGB1P09429 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HMGB1P09429 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HMGB1P09429 AL138724.1-201ENST00000606771 1088 ntBASIC25.99■■□□□ 1.75
HMGB1P09429 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HMGB1P09429 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
HMGB1P09429 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC25.98■■□□□ 1.75
HMGB1P09429 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.98■■□□□ 1.75
HMGB1P09429 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
HMGB1P09429 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms