Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS4BO75351 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.58■■□□□ 1.04
VPS4BO75351 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
VPS4BO75351 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.57■■□□□ 1.04
VPS4BO75351 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
VPS4BO75351 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VPS4BO75351 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VPS4BO75351 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS4BO75351 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
VPS4BO75351 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS4BO75351 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
VPS4BO75351 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS4BO75351 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VPS4BO75351 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS4BO75351 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS4BO75351 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
VPS4BO75351 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
VPS4BO75351 MIR4466-201ENST00000606121 54 ntBASIC21.55■■□□□ 1.04
VPS4BO75351 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
VPS4BO75351 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS4BO75351 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
VPS4BO75351 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS4BO75351 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
VPS4BO75351 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS4BO75351 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
VPS4BO75351 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
VPS4BO75351 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS4BO75351 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS4BO75351 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VPS4BO75351 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS4BO75351 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
VPS4BO75351 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS4BO75351 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS4BO75351 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS4BO75351 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 AC142381.2-201ENST00000566120 298 ntBASIC21.53■■□□□ 1.04
VPS4BO75351 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS4BO75351 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS4BO75351 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS4BO75351 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS4BO75351 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS4BO75351 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS4BO75351 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VPS4BO75351 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.52■■□□□ 1.04
VPS4BO75351 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VPS4BO75351 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
VPS4BO75351 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS4BO75351 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS4BO75351 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VPS4BO75351 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS4BO75351 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.51■■□□□ 1.03
VPS4BO75351 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS4BO75351 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.51■■□□□ 1.03
VPS4BO75351 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VPS4BO75351 ZNRF2P3-201ENST00000424200 374 ntBASIC21.51■■□□□ 1.03
VPS4BO75351 PBX2P1-201ENST00000493219 1291 ntBASIC21.51■■□□□ 1.03
VPS4BO75351 AC104564.3-201ENST00000582367 638 ntBASIC21.51■■□□□ 1.03
VPS4BO75351 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS4BO75351 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VPS4BO75351 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
VPS4BO75351 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms