Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LMX1BO60663 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LMX1BO60663 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
LMX1BO60663 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.36■□□□□ 0.69
LMX1BO60663 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.36■□□□□ 0.69
LMX1BO60663 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.36■□□□□ 0.69
LMX1BO60663 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.36■□□□□ 0.69
LMX1BO60663 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC19.36■□□□□ 0.69
LMX1BO60663 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LMX1BO60663 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LMX1BO60663 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LMX1BO60663 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.35■□□□□ 0.69
LMX1BO60663 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LMX1BO60663 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.35■□□□□ 0.69
LMX1BO60663 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.35■□□□□ 0.69
LMX1BO60663 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.35■□□□□ 0.69
LMX1BO60663 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LMX1BO60663 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LMX1BO60663 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.35■□□□□ 0.69
LMX1BO60663 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1BO60663 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.34■□□□□ 0.69
LMX1BO60663 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.34■□□□□ 0.69
LMX1BO60663 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LMX1BO60663 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
LMX1BO60663 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.34■□□□□ 0.69
LMX1BO60663 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 PBX2P1-201ENST00000493219 1291 ntBASIC19.34■□□□□ 0.69
LMX1BO60663 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LMX1BO60663 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1BO60663 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.34■□□□□ 0.69
LMX1BO60663 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.33■□□□□ 0.69
LMX1BO60663 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1BO60663 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.33■□□□□ 0.69
LMX1BO60663 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1BO60663 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LMX1BO60663 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.33■□□□□ 0.68
LMX1BO60663 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.33■□□□□ 0.68
LMX1BO60663 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LMX1BO60663 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.33■□□□□ 0.68
LMX1BO60663 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.33■□□□□ 0.68
LMX1BO60663 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LMX1BO60663 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.33■□□□□ 0.68
LMX1BO60663 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.33■□□□□ 0.68
LMX1BO60663 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LMX1BO60663 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
LMX1BO60663 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
LMX1BO60663 AC142381.2-201ENST00000566120 298 ntBASIC19.32■□□□□ 0.68
LMX1BO60663 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1BO60663 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.32■□□□□ 0.68
LMX1BO60663 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1BO60663 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.32■□□□□ 0.68
LMX1BO60663 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
LMX1BO60663 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LMX1BO60663 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LMX1BO60663 AC106739.1-201ENST00000617035 715 ntBASIC19.31■□□□□ 0.68
LMX1BO60663 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms