Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TCRBV7S3A2A0A539 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
TCRBV7S3A2A0A539 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 Z92544.1-202ENST00000571933 1220 ntBASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 AC092053.2-201ENST00000640557 1818 ntBASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TCRBV7S3A2A0A539 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 CD72-202ENST00000378430 585 ntTSL 3 BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 AC239859.2-201ENST00000444165 318 ntBASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 KRT125P-201ENST00000546827 989 ntBASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 DUX4L4-201ENST00000566884 1269 ntBASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 AC007375.3-201ENST00000600936 2314 ntBASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 AC137767.1-201ENST00000602918 1920 ntBASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TCRBV7S3A2A0A539 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TCRBV7S3A2A0A539 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 AC009299.2-201ENST00000482477 511 ntBASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 MTDHP2-201ENST00000601468 714 ntBASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 C11orf96-202ENST00000528572 1834 ntBASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
TCRBV7S3A2A0A539 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 AL451085.2-201ENST00000605085 799 ntBASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC22.46■■□□□ 1.19
TCRBV7S3A2A0A539 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
TCRBV7S3A2A0A539 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.19
TCRBV7S3A2A0A539 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TCRBV7S3A2A0A539 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 TSPY9P-201ENST00000440215 945 ntBASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 TSPY11P-201ENST00000442607 1045 ntBASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.44■■□□□ 1.18
TCRBV7S3A2A0A539 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 AC010997.5-201ENST00000609182 354 ntBASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 EXOG-217ENST00000630638 197 ntTSL 5 BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 LINC01960-201ENST00000563759 1884 ntBASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
TCRBV7S3A2A0A539 AC004687.1-201ENST00000579003 1625 ntBASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.42■■□□□ 1.18
TCRBV7S3A2A0A539 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.41■■□□□ 1.18
TCRBV7S3A2A0A539 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TCRBV7S3A2A0A539 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms