Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 AC079630.1-202ENST00000618127 1840 ntBASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.15■□□□□ 0.98
RNF103-CHMP3A0A140T963 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
RNF103-CHMP3A0A140T963 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RNF103-CHMP3A0A140T963 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
RNF103-CHMP3A0A140T963 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNF103-CHMP3A0A140T963 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RNF103-CHMP3A0A140T963 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 AC137630.3-201ENST00000607245 391 ntBASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RNF103-CHMP3A0A140T963 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RNF103-CHMP3A0A140T963 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.12■□□□□ 0.97
RNF103-CHMP3A0A140T963 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RNF103-CHMP3A0A140T963 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.1■□□□□ 0.97
RNF103-CHMP3A0A140T963 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
RNF103-CHMP3A0A140T963 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF103-CHMP3A0A140T963 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF103-CHMP3A0A140T963 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF103-CHMP3A0A140T963 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms