Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 LILRB3-203ENST00000391750 2848 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 MAP7-208ENST00000617204 4536 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 AC011511.5-201ENST00000589379 3219 ntBASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
AMBRA1Q9C0C7 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MAGEA11-202ENST00000355220 1864 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AP000358.1-201ENST00000456260 156 ntBASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 SCARNA12-201ENST00000459155 270 ntBASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AC026369.2-201ENST00000540136 1101 ntTSL 3 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AL133499.1-201ENST00000596207 608 ntBASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AC092171.5-201ENST00000608012 942 ntBASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AC091769.1-201ENST00000619576 568 ntBASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 ATP2C1-221ENST00000513801 3439 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 MRO-203ENST00000428869 1966 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
AMBRA1Q9C0C7 AC245100.6-201ENST00000427169 1918 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 GBAP1-208ENST00000566701 1546 ntBASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 P3H2-201ENST00000319332 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC12.46□□□□□ -0.42
AMBRA1Q9C0C7 PAX6-207ENST00000379129 2614 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 SOX30-203ENST00000519442 1666 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 DUSP16-201ENST00000228862 3402 ntTSL 5 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ARRDC3-AS1-201ENST00000625713 2500 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 FSCN3-201ENST00000265825 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 DDC-206ENST00000431062 1620 ntTSL 5 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ODCP-201ENST00000459650 1639 ntBASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 BAIAP3-204ENST00000426824 3930 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 CHST4-202ENST00000539698 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 OR2W2P-201ENST00000406313 909 ntBASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 GRPEL2P1-201ENST00000453145 339 ntBASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC12.45□□□□□ -0.42
AMBRA1Q9C0C7 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms