Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MIR6165-201ENST00000614803 84 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 FAM90A12P-201ENST00000519497 2375 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 FAM90A24P-201ENST00000520792 2369 ntBASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL28A1Q2UY09 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC12.83□□□□□ -0.35
COL28A1Q2UY09 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 OR7E12P-201ENST00000344740 973 ntBASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 HLA-DQB3-203ENST00000425319 356 ntBASIC12.83□□□□□ -0.36
COL28A1Q2UY09 RBM14-205ENST00000443702 732 ntTSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC104117.4-201ENST00000521486 847 ntBASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 BCAS4-206ENST00000609336 787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL28A1Q2UY09 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 FP325330.2-201ENST00000624219 5630 ntBASIC12.82□□□□□ -0.36
COL28A1Q2UY09 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL28A1Q2UY09 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms