Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 VENTXP1-201ENST00000569334 2716 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 LINC02228-202ENST00000641261 2489 ntBASIC15.15■□□□□ 0.02
SMARCA1P28370 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SMARCA1P28370 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.15■□□□□ 0.02
SMARCA1P28370 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.02
SMARCA1P28370 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 PPP1R32-203ENST00000432063 1472 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 RNF113A-201ENST00000371442 1353 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SMARCA1P28370 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 MAGED2-205ENST00000375060 1798 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 LINC02465-203ENST00000513875 1777 ntTSL 5 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC120114.4-201ENST00000623731 2194 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 PRDM11-204ENST00000530656 1536 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC15.14■□□□□ 0.01
SMARCA1P28370 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC105443.1-201ENST00000433754 712 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 AC010677.1-201ENST00000441690 412 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 HNRNPA1P10-201ENST00000444945 962 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 P2RX6P-202ENST00000450626 357 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 CHCHD10-204ENST00000520222 384 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC011603.2-201ENST00000548149 675 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 GRAMD4P6-201ENST00000556999 244 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 TSHZ3-202ENST00000558569 441 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 ABHD17AP9-201ENST00000561925 548 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 AC079414.2-201ENST00000567157 1104 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC005357.2-202ENST00000590507 1060 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC15.14■□□□□ 0.01
SMARCA1P28370 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SMARCA1P28370 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 MAGEA11-202ENST00000355220 1864 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 LINC00567-201ENST00000569854 3409 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC15.14■□□□□ 0.01
SMARCA1P28370 TAF11-202ENST00000420584 1465 ntTSL 2 BASIC15.14■□□□□ 0.01
SMARCA1P28370 AC011239.2-201ENST00000624820 1489 ntBASIC15.14■□□□□ 0.01
SMARCA1P28370 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SMARCA1P28370 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 SCN8A-215ENST00000638820 3359 ntTSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 ASGR2-201ENST00000254850 1396 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 ASGR2-202ENST00000355035 1386 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC15.13■□□□□ 0.01
SMARCA1P28370 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 SNORA30.1-201ENST00000363193 129 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC15.13■□□□□ 0.01
SMARCA1P28370 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 TRMT10B-203ENST00000377754 1881 ntTSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.13■□□□□ 0.01
SMARCA1P28370 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 CPSF4-206ENST00000441580 942 ntTSL 2 BASIC15.13■□□□□ 0.01
SMARCA1P28370 KRT19P4-201ENST00000443208 943 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 RBM14-205ENST00000443702 732 ntTSL 3 BASIC15.13■□□□□ 0.01
SMARCA1P28370 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC15.13■□□□□ 0.01
SMARCA1P28370 RPSAP16-201ENST00000447583 821 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 AC012158.2-201ENST00000536546 354 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 TMUB2-214ENST00000590235 1569 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMARCA1P28370 AC136475.7-201ENST00000602949 592 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 AC092535.4-201ENST00000609548 397 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC15.13■□□□□ 0.01
SMARCA1P28370 AC010601.2-201ENST00000623060 774 ntBASIC15.13■□□□□ 0.01
SMARCA1P28370 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms