Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SEC24B-202ENST00000399100 3780 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SOX30-203ENST00000519442 1666 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ARHGAP25-201ENST00000409030 2936 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 LEPROTL1-201ENST00000321250 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 LIPC-202ENST00000356113 2161 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 AC092810.2-201ENST00000431570 362 ntBASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 GNG10P1-201ENST00000452289 199 ntBASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 AC005777.1-201ENST00000588332 187 ntBASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 TTN-AS1-209ENST00000456053 2033 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 MIR22HG-208ENST00000574306 2626 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SH2D2A-203ENST00000392306 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 OS9-206ENST00000435406 2346 ntTSL 2 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 RN7SKP102-201ENST00000411186 315 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AL356000.1-201ENST00000441073 1238 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AC093909.3-201ENST00000504783 336 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 TREHP1-201ENST00000531328 465 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 BAK1P2-201ENST00000532665 631 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 GUCY1A3-205ENST00000506455 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 FAM183BP-201ENST00000409072 1595 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 C3orf56-201ENST00000624688 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AP001046.1-201ENST00000435702 2816 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 EFHC1-224ENST00000636702 2197 ntTSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 IQCB1-202ENST00000349820 1919 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 MIR566-201ENST00000385187 94 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 KRT18P46-201ENST00000435568 1279 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 GOLGA6L16P-201ENST00000441780 1299 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 IGKV1OR-2-201ENST00000457995 350 ntBASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AREG-202ENST00000502307 956 ntTSL 5 BASIC13.56□□□□□ -0.24
SHROOM3Q8TF72 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms