Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC118758.2-201ENST00000614242 2813 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AL157832.2-205ENST00000597245 1649 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC106047.2-201ENST00000511723 743 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 RNA5SP420-201ENST00000516997 137 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC107959.3-201ENST00000520840 484 ntTSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 MIR6746-201ENST00000620971 63 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 XYLB-203ENST00000427323 1666 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 STK24-201ENST00000376547 2492 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 AC021305.1-201ENST00000520656 1514 ntBASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SFTPA1-203ENST00000428376 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SHROOM3Q8TF72 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
SHROOM3Q8TF72 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
SHROOM3Q8TF72 RUBCN-202ENST00000296343 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
SHROOM3Q8TF72 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SHROOM3Q8TF72 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 RN7SL162P-201ENST00000579233 292 ntBASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 LDLRAD1-203ENST00000420619 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 CCT8-211ENST00000540844 1927 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 MEST-204ENST00000393187 2380 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AC011462.4-201ENST00000616866 449 ntBASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SHROOM3Q8TF72 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
SHROOM3Q8TF72 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms