Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
SIX4Q9UIU6 AC010525.1-201ENST00000585559 441 ntBASIC23.83■■□□□ 1.41
SIX4Q9UIU6 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.83■■□□□ 1.41
SIX4Q9UIU6 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SIX4Q9UIU6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.4
SIX4Q9UIU6 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 OR2I1P-207ENST00000453522 948 ntBASIC23.82■■□□□ 1.4
SIX4Q9UIU6 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX4Q9UIU6 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SIX4Q9UIU6 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 BX842568.3-201ENST00000418104 571 ntBASIC23.8■■□□□ 1.4
SIX4Q9UIU6 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 AC142381.2-201ENST00000566120 298 ntBASIC23.8■■□□□ 1.4
SIX4Q9UIU6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX4Q9UIU6 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 AC008764.7-201ENST00000593779 1081 ntBASIC23.79■■□□□ 1.4
SIX4Q9UIU6 AC233992.3-201ENST00000607491 485 ntBASIC23.79■■□□□ 1.4
SIX4Q9UIU6 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX4Q9UIU6 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
SIX4Q9UIU6 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 AC099791.1-201ENST00000416440 715 ntBASIC23.77■■□□□ 1.4
SIX4Q9UIU6 AC027682.1-201ENST00000562846 899 ntBASIC23.77■■□□□ 1.4
SIX4Q9UIU6 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC23.77■■□□□ 1.4
SIX4Q9UIU6 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 AC091305.1-201ENST00000479476 895 ntBASIC23.76■■□□□ 1.39
SIX4Q9UIU6 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SIX4Q9UIU6 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 CA15P2-201ENST00000611168 834 ntBASIC23.75■■□□□ 1.39
SIX4Q9UIU6 AC019069.1-201ENST00000610008 1333 ntBASIC23.75■■□□□ 1.39
SIX4Q9UIU6 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 RASA4CP-201ENST00000424092 1398 ntBASIC23.75■■□□□ 1.39
SIX4Q9UIU6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
SIX4Q9UIU6 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SIX4Q9UIU6 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SIX4Q9UIU6 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
SIX4Q9UIU6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
SIX4Q9UIU6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms