Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SIX2Q9NPC8 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 AC009086.3-201ENST00000623486 1008 ntBASIC23.86■■□□□ 1.41
SIX2Q9NPC8 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC23.86■■□□□ 1.41
SIX2Q9NPC8 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 AC080038.3-201ENST00000623346 1952 ntBASIC23.85■■□□□ 1.41
SIX2Q9NPC8 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 AC242852.2-201ENST00000615738 1807 ntBASIC23.85■■□□□ 1.41
SIX2Q9NPC8 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 AC139530.1-201ENST00000575312 1977 ntBASIC23.85■■□□□ 1.41
SIX2Q9NPC8 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SIX2Q9NPC8 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.84■■□□□ 1.41
SIX2Q9NPC8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC23.84■■□□□ 1.41
SIX2Q9NPC8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 AL117332.1-201ENST00000622628 974 ntBASIC23.83■■□□□ 1.41
SIX2Q9NPC8 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.83■■□□□ 1.41
SIX2Q9NPC8 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.4
SIX2Q9NPC8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SIX2Q9NPC8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 AC004687.1-201ENST00000579003 1625 ntBASIC23.82■■□□□ 1.4
SIX2Q9NPC8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SIX2Q9NPC8 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SIX2Q9NPC8 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.8■■□□□ 1.4
SIX2Q9NPC8 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 GRAMD4P7-201ENST00000578182 1232 ntBASIC23.8■■□□□ 1.4
SIX2Q9NPC8 MIR3621-201ENST00000580529 85 ntBASIC23.8■■□□□ 1.4
SIX2Q9NPC8 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 AL499627.2-201ENST00000606283 725 ntBASIC23.8■■□□□ 1.4
SIX2Q9NPC8 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
SIX2Q9NPC8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SIX2Q9NPC8 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms