Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC28BQ9BUN5 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC28BQ9BUN5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC28BQ9BUN5 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC28BQ9BUN5 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC28BQ9BUN5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC28BQ9BUN5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC28BQ9BUN5 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC28BQ9BUN5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 AC120024.1-201ENST00000562672 995 ntBASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC28BQ9BUN5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC28BQ9BUN5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 U85056.1-201ENST00000616429 682 ntBASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC28BQ9BUN5 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC28BQ9BUN5 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 FBXW4P1-201ENST00000426721 2239 ntBASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 AC144652.1-201ENST00000609974 1624 ntBASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC28BQ9BUN5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 AC092667.1-201ENST00000434301 2586 ntBASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC28BQ9BUN5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC28BQ9BUN5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 MIR4281-201ENST00000580852 62 ntBASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC28BQ9BUN5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC28BQ9BUN5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC28BQ9BUN5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC28BQ9BUN5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CCDC28BQ9BUN5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.43■■□□□ 1.02
CCDC28BQ9BUN5 KRT18P24-201ENST00000344739 1156 ntBASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms