Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CLHC1Q8NHS4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 ESRRAP2-201ENST00000418437 1549 ntBASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.2■□□□□ 0.98
CLHC1Q8NHS4 CLDN5-201ENST00000403084 2357 ntBASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 KRT125P-201ENST00000546827 989 ntBASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 AC092028.1-203ENST00000608262 953 ntBASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.19■□□□□ 0.98
CLHC1Q8NHS4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 AC242852.2-201ENST00000615738 1807 ntBASIC21.18■□□□□ 0.98
CLHC1Q8NHS4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CLHC1Q8NHS4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 LINC01529-204ENST00000636474 1715 ntBASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 MIR4787-201ENST00000607364 84 ntBASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.16■□□□□ 0.98
CLHC1Q8NHS4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 AC127496.7-201ENST00000625110 1798 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 TSPY9P-201ENST00000440215 945 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 TSPY11P-201ENST00000442607 1045 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 AC239859.2-201ENST00000444165 318 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 MTDHP2-201ENST00000601468 714 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 AC080038.3-201ENST00000623346 1952 ntBASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLHC1Q8NHS4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms