Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DUSP5P2-201ENST00000426873 1033 ntBASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 AC098934.4-201ENST00000564127 592 ntBASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
SMC1BQ8NDV3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SMC1BQ8NDV3 GCSHP5-201ENST00000443090 522 ntBASIC26.59■■□□□ 1.85
SMC1BQ8NDV3 RPS2P4-201ENST00000476944 856 ntBASIC26.59■■□□□ 1.85
SMC1BQ8NDV3 AF201337.1-201ENST00000520239 748 ntBASIC26.59■■□□□ 1.85
SMC1BQ8NDV3 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC26.59■■□□□ 1.85
SMC1BQ8NDV3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
SMC1BQ8NDV3 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SMC1BQ8NDV3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.84
SMC1BQ8NDV3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
SMC1BQ8NDV3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
SMC1BQ8NDV3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 MIR1224-201ENST00000408193 85 ntBASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
SMC1BQ8NDV3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SMC1BQ8NDV3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 AC079140.4-201ENST00000507448 529 ntBASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 AC105036.2-201ENST00000569468 176 ntBASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
SMC1BQ8NDV3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC26.52■■□□□ 1.84
SMC1BQ8NDV3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC26.52■■□□□ 1.84
SMC1BQ8NDV3 SLC7A5P1-201ENST00000568957 537 ntBASIC26.52■■□□□ 1.84
SMC1BQ8NDV3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC26.52■■□□□ 1.84
SMC1BQ8NDV3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 MIR4758-201ENST00000577688 71 ntBASIC26.51■■□□□ 1.83
SMC1BQ8NDV3 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 AC133552.2-202ENST00000575694 574 ntBASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SMC1BQ8NDV3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms