Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AC099791.2-201ENST00000605725 427 ntBASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC65Q8IXS2 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 AL499627.2-201ENST00000606283 725 ntBASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.56■■□□□ 1.52
CCDC65Q8IXS2 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
CCDC65Q8IXS2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 AC006455.2-201ENST00000429931 906 ntBASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 AC131281.2-201ENST00000520478 145 ntBASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 MIR4466-201ENST00000606121 54 ntBASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CCDC65Q8IXS2 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 AC092171.4-201ENST00000609130 632 ntBASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 AC004687.1-201ENST00000579003 1625 ntBASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.53■■□□□ 1.52
CCDC65Q8IXS2 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 ESRRAP2-201ENST00000418437 1549 ntBASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CCDC65Q8IXS2 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 pRNA.6-201ENST00000610482 90 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 pRNA.5-201ENST00000612139 90 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 AC131212.1-201ENST00000613771 668 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 pRNA.11-201ENST00000618423 90 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 pRNA.13-201ENST00000619112 90 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 AC233723.2-201ENST00000623798 2106 ntBASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
CCDC65Q8IXS2 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.5■■□□□ 1.51
CCDC65Q8IXS2 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms