Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
C9orf40Q8IXQ3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
C9orf40Q8IXQ3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
C9orf40Q8IXQ3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 AP001330.3-201ENST00000520123 633 ntBASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
C9orf40Q8IXQ3 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 AF213884.3-201ENST00000563833 479 ntBASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
C9orf40Q8IXQ3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 SLC47A1P1-202ENST00000449666 945 ntBASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 OR2I1P-207ENST00000453522 948 ntBASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 SUDS3P1-201ENST00000505831 966 ntBASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
C9orf40Q8IXQ3 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 MIR939-201ENST00000401314 82 ntBASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
C9orf40Q8IXQ3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 BX842568.3-201ENST00000418104 571 ntBASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 AC142381.2-201ENST00000566120 298 ntBASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 AC010525.1-201ENST00000585559 441 ntBASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 AL136967.2-201ENST00000623968 743 ntBASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
C9orf40Q8IXQ3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 AC027682.1-201ENST00000562846 899 ntBASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 AC008764.7-201ENST00000593779 1081 ntBASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
C9orf40Q8IXQ3 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 AC233992.3-201ENST00000607491 485 ntBASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
C9orf40Q8IXQ3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.45■□□□□ 0.87
C9orf40Q8IXQ3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 AC099791.1-201ENST00000416440 715 ntBASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
C9orf40Q8IXQ3 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
C9orf40Q8IXQ3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
C9orf40Q8IXQ3 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
C9orf40Q8IXQ3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
C9orf40Q8IXQ3 AC091305.1-201ENST00000479476 895 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms