Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
RETREG3Q86VR2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 AC026310.3-201ENST00000625186 2373 ntBASIC21.09■□□□□ 0.97
RETREG3Q86VR2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RETREG3Q86VR2 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.08■□□□□ 0.97
RETREG3Q86VR2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.08■□□□□ 0.97
RETREG3Q86VR2 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RETREG3Q86VR2 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RETREG3Q86VR2 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.08■□□□□ 0.96
RETREG3Q86VR2 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
RETREG3Q86VR2 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RETREG3Q86VR2 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RETREG3Q86VR2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.07■□□□□ 0.96
RETREG3Q86VR2 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RETREG3Q86VR2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RETREG3Q86VR2 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 AC010542.4-201ENST00000563151 1910 ntBASIC21.04■□□□□ 0.96
RETREG3Q86VR2 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RETREG3Q86VR2 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 BHLHE23-202ENST00000612929 1109 ntBASIC21.03■□□□□ 0.96
RETREG3Q86VR2 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
RETREG3Q86VR2 FAM99A-202ENST00000538190 1989 ntBASIC21.03■□□□□ 0.96
RETREG3Q86VR2 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms