Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 AC026471.1-201ENST00000564629 3026 ntBASIC13.93□□□□□ -0.18
LINC00643Q86TS7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC13.93□□□□□ -0.18
LINC00643Q86TS7 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00643Q86TS7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 AC139530.1-201ENST00000575312 1977 ntBASIC13.91□□□□□ -0.18
LINC00643Q86TS7 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 AC087289.5-201ENST00000586076 3175 ntBASIC13.91□□□□□ -0.18
LINC00643Q86TS7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LINC00643Q86TS7 LETM1P2-201ENST00000597330 2178 ntBASIC13.9□□□□□ -0.18
LINC00643Q86TS7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LINC00643Q86TS7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC13.89□□□□□ -0.19
LINC00643Q86TS7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms