Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.35■■■□□ 2.13
RC3H1Q5TC82 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 AC104771.1-201ENST00000603335 964 ntBASIC28.35■■■□□ 2.13
RC3H1Q5TC82 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RC3H1Q5TC82 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
RC3H1Q5TC82 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RC3H1Q5TC82 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC28.33■■■□□ 2.13
RC3H1Q5TC82 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.33■■■□□ 2.13
RC3H1Q5TC82 BID-214ENST00000617586 542 ntTSL 5 BASIC28.33■■■□□ 2.13
RC3H1Q5TC82 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
RC3H1Q5TC82 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.32■■■□□ 2.12
RC3H1Q5TC82 AC135731.1-201ENST00000569415 2548 ntBASIC28.32■■■□□ 2.12
RC3H1Q5TC82 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.32■■■□□ 2.12
RC3H1Q5TC82 WWOX-218ENST00000627394 894 ntTSL 5 BASIC28.32■■■□□ 2.12
RC3H1Q5TC82 BX005040.4-201ENST00000637145 1518 ntBASIC28.32■■■□□ 2.12
RC3H1Q5TC82 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
RC3H1Q5TC82 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 CROCCP5-201ENST00000436658 830 ntBASIC28.3■■■□□ 2.12
RC3H1Q5TC82 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
RC3H1Q5TC82 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 AC022211.4-201ENST00000625094 2161 ntBASIC28.29■■■□□ 2.12
RC3H1Q5TC82 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
RC3H1Q5TC82 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC28.28■■■□□ 2.12
RC3H1Q5TC82 KRT19P1-201ENST00000405746 1186 ntBASIC28.28■■■□□ 2.12
RC3H1Q5TC82 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC28.28■■■□□ 2.12
RC3H1Q5TC82 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC28.28■■■□□ 2.12
RC3H1Q5TC82 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
RC3H1Q5TC82 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
RC3H1Q5TC82 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
RC3H1Q5TC82 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 NCF1B-203ENST00000435988 1254 ntBASIC28.26■■■□□ 2.11
RC3H1Q5TC82 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 AC068587.7-201ENST00000641602 218 ntBASIC28.26■■■□□ 2.11
RC3H1Q5TC82 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
RC3H1Q5TC82 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
RC3H1Q5TC82 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RC3H1Q5TC82 ABHD17AP1-201ENST00000358206 933 ntBASIC28.24■■■□□ 2.11
RC3H1Q5TC82 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RC3H1Q5TC82 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RC3H1Q5TC82 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC28.24■■■□□ 2.11
RC3H1Q5TC82 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
RC3H1Q5TC82 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
RC3H1Q5TC82 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms