Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
LRRK1Q38SD2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 AC027612.3-201ENST00000413684 1047 ntBASIC22.02■■□□□ 1.12
LRRK1Q38SD2 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 IRS3P-201ENST00000223076 1006 ntBASIC22.02■■□□□ 1.12
LRRK1Q38SD2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
LRRK1Q38SD2 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.02■■□□□ 1.11
LRRK1Q38SD2 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 MIR572-201ENST00000384983 95 ntBASIC22.01■■□□□ 1.11
LRRK1Q38SD2 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LRRK1Q38SD2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LRRK1Q38SD2 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
LRRK1Q38SD2 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22■■□□□ 1.11
LRRK1Q38SD2 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
LRRK1Q38SD2 GRAMD4P2-201ENST00000423297 1097 ntBASIC22■■□□□ 1.11
LRRK1Q38SD2 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22■■□□□ 1.11
LRRK1Q38SD2 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.99■■□□□ 1.11
LRRK1Q38SD2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.98■■□□□ 1.11
LRRK1Q38SD2 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
LRRK1Q38SD2 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 AP005435.1-201ENST00000529293 1178 ntBASIC21.96■■□□□ 1.11
LRRK1Q38SD2 AC087623.3-201ENST00000607047 1098 ntBASIC21.96■■□□□ 1.11
LRRK1Q38SD2 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.96■■□□□ 1.11
LRRK1Q38SD2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.11
LRRK1Q38SD2 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms