Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC31.14■■■□□ 2.58
MSH6P52701 AC083906.2-201ENST00000511578 360 ntBASIC31.14■■■□□ 2.58
MSH6P52701 SLC7A5P2-201ENST00000553010 536 ntBASIC31.14■■■□□ 2.58
MSH6P52701 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
MSH6P52701 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.14■■■□□ 2.57
MSH6P52701 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MSH6P52701 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
MSH6P52701 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
MSH6P52701 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
MSH6P52701 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC31.13■■■□□ 2.57
MSH6P52701 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
MSH6P52701 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH6P52701 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH6P52701 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC31.12■■■□□ 2.57
MSH6P52701 TESC-206ENST00000541210 936 ntTSL 3 BASIC31.12■■■□□ 2.57
MSH6P52701 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC31.12■■■□□ 2.57
MSH6P52701 BX005040.4-201ENST00000637145 1518 ntBASIC31.12■■■□□ 2.57
MSH6P52701 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
MSH6P52701 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC31.12■■■□□ 2.57
MSH6P52701 EI24-204ENST00000527235 1625 ntTSL 5 BASIC31.12■■■□□ 2.57
MSH6P52701 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC31.12■■■□□ 2.57
MSH6P52701 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC31.12■■■□□ 2.57
MSH6P52701 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
MSH6P52701 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH6P52701 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC31.11■■■□□ 2.57
MSH6P52701 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
MSH6P52701 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC31.11■■■□□ 2.57
MSH6P52701 TFG-210ENST00000620299 1289 ntTSL 5 BASIC31.11■■■□□ 2.57
MSH6P52701 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
MSH6P52701 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC31.11■■■□□ 2.57
MSH6P52701 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC31.1■■■□□ 2.57
MSH6P52701 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
MSH6P52701 AL138781.1-201ENST00000566567 1274 ntBASIC31.1■■■□□ 2.57
MSH6P52701 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH6P52701 STX4-202ENST00000394998 1498 ntTSL 2 BASIC31.1■■■□□ 2.57
MSH6P52701 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH6P52701 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH6P52701 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
MSH6P52701 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.1■■■□□ 2.57
MSH6P52701 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
MSH6P52701 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC31.09■■■□□ 2.57
MSH6P52701 AC008687.6-201ENST00000596318 630 ntBASIC31.09■■■□□ 2.57
MSH6P52701 MAZ-216ENST00000616501 991 ntTSL 5 BASIC31.09■■■□□ 2.57
MSH6P52701 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
MSH6P52701 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
MSH6P52701 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC31.09■■■□□ 2.57
MSH6P52701 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
MSH6P52701 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 AC069152.1-201ENST00000438030 544 ntBASIC31.08■■■□□ 2.57
MSH6P52701 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC31.08■■■□□ 2.57
MSH6P52701 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC31.08■■■□□ 2.57
MSH6P52701 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC31.08■■■□□ 2.57
MSH6P52701 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC31.08■■■□□ 2.57
MSH6P52701 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
MSH6P52701 FP325331.1-202ENST00000623531 1380 ntBASIC31.07■■■□□ 2.57
MSH6P52701 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
MSH6P52701 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC31.07■■■□□ 2.56
MSH6P52701 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC31.07■■■□□ 2.56
MSH6P52701 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC31.06■■■□□ 2.56
MSH6P52701 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
MSH6P52701 METTL15-202ENST00000403099 795 ntTSL 5 BASIC31.06■■■□□ 2.56
MSH6P52701 RGMA-211ENST00000557420 989 ntTSL 3 BASIC31.06■■■□□ 2.56
MSH6P52701 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC31.06■■■□□ 2.56
MSH6P52701 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
MSH6P52701 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
MSH6P52701 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC31.05■■■□□ 2.56
MSH6P52701 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC31.05■■■□□ 2.56
MSH6P52701 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC31.05■■■□□ 2.56
MSH6P52701 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC31.05■■■□□ 2.56
MSH6P52701 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC31.05■■■□□ 2.56
MSH6P52701 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
MSH6P52701 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC31.05■■■□□ 2.56
MSH6P52701 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC31.05■■■□□ 2.56
MSH6P52701 OAS3-207ENST00000551007 998 ntTSL 2 BASIC31.05■■■□□ 2.56
MSH6P52701 ARL16-209ENST00000573715 763 ntTSL 3 BASIC31.05■■■□□ 2.56
MSH6P52701 ARL16-211ENST00000576135 694 ntTSL 3 BASIC31.05■■■□□ 2.56
MSH6P52701 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC31.05■■■□□ 2.56
MSH6P52701 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
MSH6P52701 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms