Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CXCL12P48061 CROCCP5-201ENST00000436658 830 ntBASIC22.34■■□□□ 1.17
CXCL12P48061 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.34■■□□□ 1.17
CXCL12P48061 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.34■■□□□ 1.17
CXCL12P48061 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CXCL12P48061 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CXCL12P48061 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CXCL12P48061 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 AC144652.1-201ENST00000609974 1624 ntBASIC22.33■■□□□ 1.17
CXCL12P48061 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.33■■□□□ 1.17
CXCL12P48061 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CXCL12P48061 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.33■■□□□ 1.16
CXCL12P48061 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CXCL12P48061 BX005040.4-201ENST00000637145 1518 ntBASIC22.32■■□□□ 1.16
CXCL12P48061 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CXCL12P48061 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
CXCL12P48061 NCF1B-203ENST00000435988 1254 ntBASIC22.32■■□□□ 1.16
CXCL12P48061 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CXCL12P48061 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.32■■□□□ 1.16
CXCL12P48061 TMEM191A-211ENST00000637163 1067 ntBASIC22.32■■□□□ 1.16
CXCL12P48061 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CXCL12P48061 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.32■■□□□ 1.16
CXCL12P48061 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CXCL12P48061 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.31■■□□□ 1.16
CXCL12P48061 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.31■■□□□ 1.16
CXCL12P48061 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC22.31■■□□□ 1.16
CXCL12P48061 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CXCL12P48061 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.3■■□□□ 1.16
CXCL12P48061 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.3■■□□□ 1.16
CXCL12P48061 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CXCL12P48061 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CXCL12P48061 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CXCL12P48061 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.3■■□□□ 1.16
CXCL12P48061 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.3■■□□□ 1.16
CXCL12P48061 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CXCL12P48061 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CXCL12P48061 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
CXCL12P48061 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CXCL12P48061 KRT18P11-201ENST00000435214 1283 ntBASIC22.29■■□□□ 1.16
CXCL12P48061 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 AC011767.1-201ENST00000617410 1153 ntBASIC22.29■■□□□ 1.16
CXCL12P48061 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CXCL12P48061 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
CXCL12P48061 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 ESRRAP2-201ENST00000418437 1549 ntBASIC22.28■■□□□ 1.16
CXCL12P48061 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.28■■□□□ 1.16
CXCL12P48061 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
CXCL12P48061 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.28■■□□□ 1.16
CXCL12P48061 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.28■■□□□ 1.16
CXCL12P48061 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CXCL12P48061 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.28■■□□□ 1.16
CXCL12P48061 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CXCL12P48061 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CXCL12P48061 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CXCL12P48061 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CXCL12P48061 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CXCL12P48061 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.27■■□□□ 1.16
CXCL12P48061 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
CXCL12P48061 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CXCL12P48061 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.27■■□□□ 1.16
CXCL12P48061 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.27■■□□□ 1.16
CXCL12P48061 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CXCL12P48061 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.26■■□□□ 1.15
CXCL12P48061 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.26■■□□□ 1.15
CXCL12P48061 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
CXCL12P48061 GPX1P1-201ENST00000388829 606 ntBASIC22.26■■□□□ 1.15
CXCL12P48061 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.26■■□□□ 1.15
CXCL12P48061 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.26■■□□□ 1.15
CXCL12P48061 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.26■■□□□ 1.15
CXCL12P48061 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.26■■□□□ 1.15
CXCL12P48061 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.26■■□□□ 1.15
CXCL12P48061 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CXCL12P48061 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms