Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CDX1P47902 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.9■□□□□ 0.46
CDX1P47902 AL356740.2-201ENST00000601559 647 ntBASIC17.9■□□□□ 0.46
CDX1P47902 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC17.9■□□□□ 0.46
CDX1P47902 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDX1P47902 AC008406.3-201ENST00000620001 1374 ntBASIC17.9■□□□□ 0.46
CDX1P47902 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CDX1P47902 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.89■□□□□ 0.46
CDX1P47902 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.46
CDX1P47902 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC17.89■□□□□ 0.45
CDX1P47902 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CDX1P47902 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.89■□□□□ 0.45
CDX1P47902 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CDX1P47902 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
CDX1P47902 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.89■□□□□ 0.45
CDX1P47902 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.89■□□□□ 0.45
CDX1P47902 MIR3621-201ENST00000580529 85 ntBASIC17.89■□□□□ 0.45
CDX1P47902 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.89■□□□□ 0.45
CDX1P47902 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.89■□□□□ 0.45
CDX1P47902 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.89■□□□□ 0.45
CDX1P47902 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CDX1P47902 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CDX1P47902 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CDX1P47902 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.88■□□□□ 0.45
CDX1P47902 TFPT-201ENST00000391757 774 ntTSL 5 BASIC17.88■□□□□ 0.45
CDX1P47902 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.88■□□□□ 0.45
CDX1P47902 AL117332.1-201ENST00000622628 974 ntBASIC17.88■□□□□ 0.45
CDX1P47902 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CDX1P47902 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.88■□□□□ 0.45
CDX1P47902 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CDX1P47902 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX1P47902 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX1P47902 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CDX1P47902 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX1P47902 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX1P47902 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX1P47902 SRR-208ENST00000576848 588 ntTSL 4 BASIC17.87■□□□□ 0.45
CDX1P47902 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDX1P47902 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX1P47902 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC17.86■□□□□ 0.45
CDX1P47902 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX1P47902 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX1P47902 AL022069.1-201ENST00000568025 1636 ntBASIC17.86■□□□□ 0.45
CDX1P47902 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX1P47902 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CDX1P47902 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX1P47902 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 AK3-203ENST00000447596 705 ntTSL 2 BASIC17.85■□□□□ 0.45
CDX1P47902 CLTA-206ENST00000466396 695 ntTSL 2 BASIC17.85■□□□□ 0.45
CDX1P47902 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC17.85■□□□□ 0.45
CDX1P47902 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.85■□□□□ 0.45
CDX1P47902 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX1P47902 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDX1P47902 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.84■□□□□ 0.45
CDX1P47902 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.84■□□□□ 0.45
CDX1P47902 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDX1P47902 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CDX1P47902 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CDX1P47902 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC17.84■□□□□ 0.45
CDX1P47902 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms